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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGCAGTAGAAGAATCACGGAACCTTCCTTGGGGAAAAGACAATCAAAGAGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAGgtatgtttcaattccccatttacgtaatagatgctcaaatatctctatacattgccacttttcttgttaaatatttggctgagacttggaatatgatttccttccaacag

Basic information

species Vitis vinifera
transcript Vv06s0061g00700.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362822|gb|EC926378.1|EC926378
EST:     AGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAG                         GCTTACTTCAGGAGCTCGGGTTATAATTCAAACCAAAGCCGCCTGCGACAC
genomic: AGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAGgtatgtttca ... cttccaacagGCTTACTTCAGGAGCTCGGGTTATAATTCAAACCAAAGCCGCCTGCGACAC
EST: gi|18459374|gb|BM437652.1|BM437652
EST:     AGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAG                         GCTTACTTCAGGAGCTCGGGTTATAATTCAAACCAAAGCCGCCTGCGACAC
genomic: AGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAGgtatgtttca ... cttccaacagGCTTACTTCAGGAGCTCGGGTTATAATTCAAACCAAAGCCGCCTGCGACAC
EST: gi|110365496|gb|EC928579.1|EC928579
EST:     AGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAG                         GCTTACTTCAGGAGCTCGGGTTATAATTCAAACCAAAGCCGCCTGCGACAC
genomic: AGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAGgtatgtttca ... cttccaacagGCTTACTTCAGGAGCTCGGGTTATAATTCAAACCAAAGCCGCCTGCGACAC
EST: gi|110416128|gb|EC982086.1|EC982086
EST:     AGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAG                         GCTTACTTCAGGAGCTCGGGTTATAATTCAAACCAAAGCCGCCTGCGACAC
genomic: AGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAGgtatgtttca ... cttccaacagGCTTACTTCAGGAGCTCGGGTTATAATTCAAACCAAAGCCGCCTGCGACAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAGCAGTAGAAGAATCACGGAACCTTCCTTGGGGAAAAGACAATCAAAGAGGTTAGATTCCTTCAGAGAAGATGAAGATGTAATCCAAATCGAAGAAAGgtatgtttcaattccccatttacgtaatagatgctcaaatatctctatacattgccacttttcttgttaaatatttggctgagacttggaatatgatttccttccaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA