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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGATATTTGGGCTGATATTGGGAGTAGTAGCGAGATATTCTGTTCAGCAGGATCTTACTGTCCATCAACTATCAAAAAAATTCCTTGCAGTAGTGGgtatttattattatcccataacttcttgtacttgtccattttttttctttgagtttcttatttcatattcatttgtgttttaatcataagaatctccggtatcactctcttctctcataatgctattatttcctttttttttttttttcag

Basic information

species Vitis vinifera
transcript Vv06s0004g02490.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G20220.1 (Glycine max), 5'ss of exon 3
---------------------------------------------GAGCTGATATTTGGGCTGATATTGGGAGTAGTAGCGAGATATTCTGTTCAGCAGGATCTTACTGTCCATCAACTATCAAAAAAATTCCTTGCAGTAGTGGgtatttattattatcccataacttcttgtacttgtccattttttttctttgagtttcttatttcatattcatttgtgttttaatcataagaatctccggtatcactctcttctctcataatgctattatttcctttttttttttttttcag
                                             | || ||||||||||| ||||||  ||||||||| ||| | |||||||||||||| || |  ||||| || || ||   ||||| |||||||| ||  ||||| | ||   ||| ||  |||||   ||  | |  |    ||  | ||| | ||| |                                                                                             
ATCGTTATCAGCTTCCTCCTGGAAAGCCTAACCATACTTGTGGTGGGGCAGATATTTGGGCAGATATTCAGAGTAGTAGTGAGGTGTTCTGTTCAGCAGGgtcattttgtccctctacaattgtaaaaaatccttgcaataaagggtagtaatatctatacctaaactttcagttttagaac----ttactttttaaatttata--------------------------------------------------------------------------------------------

upper sequence: Vv06s0004g02490.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G60740.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGCTGATATTTGGGCTGATATTGGGAGTAGTAGCGAGATATTCTGTTCAGCAGGATCTTACTGTCCATCAACTATCAAAAAAATTCCTTGCAGTAGTGGgtatttattattatcccataacttcttgtacttgtccattttttttctttgagtttcttatttcatattcatttgtgttttaatcataagaatctccggtatcactctcttctctcataatgctattatttcctttttttttttttttcag
||||||||||||||||||||||||| |||||||| ||  | ||||||||||| ||||| |  ||||| || |||||| | ||  ||||||| | ||  |||||      | || |  | ||    ||  | ||      |||     ||    |||||    |||  |  | |  | ||||  |        ||||| |                                                    
GAGCTGATATTTGGGCTGATATTGGTAGTAGTAGTGAAGTTTTCTGTTCAGCTGGATCCTTTTGTCCTTCCACTATCGACAAGCTTCCTTGTACTAAAGGgta------actaactaagaatgattttca-ttactttctttgaagattcatctttctctaatcaggtagactaatcttttgttt-------tctccag----------------------------------------------------