Sequence
atgc intronic sequence ATGC exonic sequenceGCTGGGTATGTTGGTAGAGGGGGGTGCAGATAATGTGAACCAATGCTTTCTTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgtaatattttctctctgttcattttgtagagtgtttaagatgccatcaggcttttagctgtttactttcctcataagcatttataaggttcaggttcttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os11g14180.1 (Oryza sativa), 5'ss of exon 3
GCTGGGTATGTTGGTAGAGGGGGGTGCAGATAATGTGAACCAATGCTTTCTTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgtaatatttt--ctctctgttcat-tttgtagagtgtttaagatgccatcaggcttttagctgt-ttactttcctcataagcatttataaggttcaggttcttt
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CTTAGAGTTGTTAGTAGAGGGTGGTGCCGATAATGTGAACCAGTGCTTTCTTGAGGCTGCTCGCTATGGAAGCACTGAACTCGTGCGCATCTTACTTCAGgtaataataaaaacaataattcacatgtgaatcttatttcagttaataataaa-tattagttgtactatttaggttaatgactcctactgagcaaacaata---
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G017624_T01 (Zea mays), 5'ss of exon 5
GCTGGGTATGTTGGTAGAGGGGGGTGCAGATAATGTGAACCAATGCTTTCTTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgtaatattttctctctgttcattttgtagagtgtttaagatgccatcaggcttttagctgtttactttcctcataagcatttataaggttcaggttcttt----
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TTTAGAGTTGTTGGTAGAGGGTGGCGCAGACAATGTGAACCAATGCTTTCTTGAAGCTGCACGCTATGGCAGCACTGAGCTTGTGCGGATCTTACTTCAGgtaat---tttagtgtactcatgcaatttagtttattacaagtt-ccaggtgtaaatataagtcattttaggatgtgcactggtttgattgagcttttttgttt
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G44090.2 (Arabidopsis thaliana), 5'ss of exon 3
GCTGGGTATGTTGGTAGAGGGGGGTGCAGATAATGTGAACCAATGCTTTCTTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgtaatattttctctctgttcattttgtagagtgtttaagatgccatcaggcttttagctgtttactttcctcataagcatttataaggttcaggttcttt
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GCTCGGTATGCTGGTGGAAGGAGGCGCAGATAATGTAAATCAGTGCTTCCTTGAAGCTTCTCGTTTTGGGAGCACAGAACTTGTGCGCATCTTGTTGCAGgtaa-atctaattcttaatgact-------gcttgcaagttactttgtgcaatctaactgaactttttcctggtgcag----------------------
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G59910.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTGGGTATGTTGGTAGAGGGGGGTGCAGATAATGTGAACCAATGCTTTCTTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgtaatattttctctctgttcatt--ttgtagagt-gtttaagatgccatcaggcttttagctgtttactttcctcataagcatttataaggttcaggttcttt
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GCTCGGTATGCTTGTTGAAGGTGGCGCAGATAATGTGAACCAATGTTTCCTTGAAGCTTCACGTTTTGGTAGTACAGAACTTGTCCGCGTCTTATTGCAGgtaa-gcttccattcttttgattgcttctagacttatagaaggtctcttttcgtgctcaaatattgtatttcctgg--agcag--------------------
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S196_106V6.1 (Physcomitrella patens), 5'ss of exon 4
GCTGGGTATGTTGGTAGAGGGGGGTGCAGATAATGTGAACCAATGCTTTCTTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgta-------atattttctctctgttcattttgtagagtgtttaagatgccatcaggcttttagctgtttactttcctc----ataagcatttataaggttc---aggttcttt-----------------
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GCTTGGGCTTTTGGTTGAGGGTGGTGCAGACAATGTGAACCAATGCTTTTTGGAAGCCGCTAGGTTTGGAAGCACAGAGCTTGTACGAATATTGCTTCAGgtatcaatcaatacactcttatggttagctttttcgatttcagttgtacatatatgtctcttggatacgaaaatttgattggaacaagtattgaagctgttatagaagtggtctcttgtatgtatgtgcag
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S137_124V6.1 (Physcomitrella patens), 5'ss of exon 3
GCTGGGTATGTTGGTAGAGGGGGGTGCAGATAATGTGAACCAATGCTTTCTTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgtaatattttctctctgttcat--tttgtagagtgtttaagatgccatcaggcttttagct-gtttactttcctcataagcatttataaggttcaggttcttt-----------------------------
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GCTTGGGCTTCTGGTAGAAGGAGGTGCAGACAATGTGAACCAATGCTTTTTGGAAGCCGCTAGGTTTGGGAGTACTGAGCTTGTACGAATATTGCTCCAGgtattaagcaatgcaaacttgtggttgtctttacgatttagcttatacaaatcttgtccctagggtacgtgtagcttgagtggagtaggtgttgaggctgacactgaggtaatgtcttgtatgtatgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110719143|gb|EE096784.1|EE096784EST: TTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAG ATTGCCCAAAGGAACAGCTTGGATGTTGATGTTGACTTGGCTTTGGGCTTT
genomic: TTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgtaatatttt ... tggccattagATTGCCCAAAGGAACAGCTTGGATGTTGATGTTGACTTGGCTTTGGGCTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGGGTATGTTGGTAGAGGGGGGTGCAGATAATGTGAACCAATGCTTTCTTGAAGCCTCTCGTTTTGGGAGCACAGAGCTTGTTAGAATCTTATTGCAGgtaatattttctctctgttcattttgtagagtgtttaagatgccatcaggcttttagctgtttactttcctcataagcatttataaggttcaggttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctc