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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGTGCAGGAATGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatggaacaccaatacaatcccaacctatctcgatctgttctacagtttatgatgagttgattgtttatgtaatcaaatcaaaccgacaatctgcag

Basic information

species Vitis vinifera
transcript Vv05s0077g01290.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458263|gb|BM436541.1|BM436541
EST:     TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG                         AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: gi|110700463|gb|EE078531.1|EE078531
EST:     TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAATTACAG                         AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: gi|110400864|gb|EC967446.1|EC967446
EST:     TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG                         AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: gi|110381493|gb|EC934610.1|EC934610
EST:     TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG                         AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: gi|110373187|gb|EC937404.1|EC937404
EST:     TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG                         AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: gi|110397101|gb|EC962822.1|EC962822
EST:     TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAATTACAG                         AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
EST: gi|77579368|gb|DV218513.1|DV218513
EST:     TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAG                         AGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC
genomic: TGAACCAAAAATCAACAGTGGCCGTAGAGACATTGCGCCCAAAGTTACAGgtattaaatg ... caatctgcagAGAACGCCACACCAACGGCTCCCCCCTCGAAGACCTGCTTGTACTTCTGGC