Sequence
atgc intronic sequence ATGC exonic sequenceGAGATATTATCACTATGAAGTCACTACGGAATGCTATGGTTGTTGTCATGGCATTGGGTGGATCTACCAATGCTGTATTACATTTAATTGCCATTGCAAGgtaagagtgtggtgagaaagttcccctgggtatgatttgcatcgctcagaattgctcatgataagattcttggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os08g44530.1 (Oryza sativa), 5'ss of exon 5
GAGATATTATCACTATGAAGTCACTACGGAATGCTATGGTTGTTGTCATGGCATTGGGTGGATCTACCAATGCTGTATTACATTTAATTGCCATTGCAAGgtaagagtgtggtgagaaagttcccctgggtatgatttgcatcgctcagaattgctcatgataagattcttggcag
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AAGACATTATCACTGAGAAATCTTTGCGGAACGCAATGGTCATTGTCATGGCACTTGGTGGGTCTACTAATGCTGTTTTGCATTTAATTGCTATCGCTAGgtgggt-tatcttcctcttgtctgctttttaatgtcttggatag---acaaatgctgattgttttcttcttt-cag
upper sequence: Vv05s0051g00830.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G27810.1 (Glycine max), 5'ss of exon 5
GAGATATTATCACTATGAAGTCACTACGGAATGCTATGGTTGTTGTCATGGCATTGGGTGGATCTACCAATGCTGTATTACATTTAATTGCCATTGCAAGgtaag---agtgtggtgagaaagttcccctgggtatg-atttgcatcgctcagaattgctcatgataagattcttggcag
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GAGATATCATCACTCGTAAATCACTACGTAATGCAATGGTTATAGTTATGGCACTTGGTGGATCTACTAATGCTGTGTTACATTTAATTGCTATTGCCAAgtgagtgaagtttgatgccagagatcctatttatatacaataaccctgagatgaaacctcaagtgtaatgattttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71885531|gb|DT034586.1|DT034586EST: GCATTGGGTGGATCTACCAATGCTGTATTACATTTAATTGCCATTGCAAG GTCTGTTGGTCTACAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGA
genomic: GCATTGGGTGGATCTACCAATGCTGTATTACATTTAATTGCCATTGCAAGgtaagagtgt ... ttcttggcagGTCTGTTGGTCTGCAGTTAACTCTTGATGATTTTCAGAAAGTAAGTGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGATATTATCACTATGAAGTCACTACGGAATGCTATGGTTGTTGTCATGGCATTGGGTGGATCTACCAATGCTGTATTACATTTAATTGCCATTGCAAGgtaagagtgtggtgagaaagttcccctgggtatgatttgcatcgctcagaattgctcatgataagattcttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG