1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAAGGTTAATATTGCTCGTGGTGGACATCGCATAGCAACTGTACTCATGTATCTTTCTGATGTGGTCAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAGgttagttcaagtattctccttgtccatttttattagaacaattacactgtttcagaagcatttcctatctaacctaccttgggattcttggtgtccataa...
species | Vitis vinifera |
transcript | Vv05s0020g02220.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATCTTTCTGATGTGGTGAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAG GAACCTTCACGCCGTAAACCACTTCCAACAAATGATGATTTATCCGAGTGTEST: gi|110703913|gb|EE081266.1|EE081266
genomic: ATCTTTCTGATGTGGTCAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAGgttagttcaa ... ttgtcaacagGAACCTTCACGCCGTAAACCACTTCCAACAAATGATGATTTATCCGAGTGT
EST: ATCTTTCTGATGTGGTGAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAG GAACCTTCACGCCGTAAACCACTTCCAACAAATGATGATTTATCCGAGTGTEST: gi|110368369|gb|EC932343.1|EC932343
genomic: ATCTTTCTGATGTGGTCAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAGgttagttcaa ... ttgtcaacagGAACCTTCACGCCGTAAACCACTTCCAACAAATGATGATTTATCCGAGTGT
EST: ATCTTTCTGATGTGGTGAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAG GAACCTTCACGCCGTAAACCACTTCCAACAAATGATGATTTATCCGAGTGT
genomic: ATCTTTCTGATGTGGTCAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAGgttagttcaa ... ttgtcaacagGAACCTTCACGCCGTAAACCACTTCCAACAAATGATGATTTATCCGAGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGTTAATATTGCTCGTGGTGGACATCGCATAGCAACTGTACTCATGTATCTTTCTGATGTGGTCAAAGGTGGTGAAACTGTTTTTCCCATGGCAGAGgttagttcaagtattctccttgtccatttttattagaacaattacactgtttcagaagcatttcctatctaacctaccttgggattcttggtgtccataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaacaa