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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAGTGCCGAGGATGCACTACAGAGATTGAATGGGACTGTTATTGGCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcactttccatctagattcctaatgaaggttcccttagtcaactagagattattcctccatctcacttttagttattctattctggtctgcggt...

Basic information

species Vitis vinifera
transcript Vv03s0063g00850.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27585725|gb|CB008420.1|CB008420
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110358590|gb|EC922912.1|EC922912
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|46918297|gb|CN547626.1|CN547626
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110365355|gb|EC928212.1|EC928212
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|30253349|gb|CB970900.1|CB970900
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|22015001|gb|BQ800035.1|BQ800035
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|30137628|gb|CB922966.1|CB922966
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|83277064|gb|DV941072.1|DV941072
EST:     GCAAGCAGACTGTTCGTTTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|34363008|gb|CF404593.1|CF404593
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110716935|gb|EE092352.1|EE092352
EST:     GCAAGCAGACTGTTCGTCTATCAGGGGGC-GTAATCCGGGAAGCAAGCAT                         TGGAAAAATGAT
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGAT
EST: gi|110358130|gb|EC922123.1|EC922123
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110385108|gb|EC949601.1|EC949601
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|34362110|gb|CF403695.1|CF403695
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|51050746|gb|CO818706.1|CO818706
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110385313|gb|EC949825.1|EC949825
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110702788|gb|EE079064.1|EE079064
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCA
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCA
EST: gi|30128238|gb|CB913577.1|CB913577
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110357598|gb|EC921807.1|EC921807
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110359944|gb|EC922319.1|EC922319
EST:     GCAAGCAGACTGTTCGTTTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110372319|gb|EC936474.1|EC936474
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110364091|gb|EC927736.1|EC927736
EST:     GCAAGCAGACTGTTTGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|32245689|gb|CD711508.1|CD711508
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|30251719|gb|CB969452.1|CB969452
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110378975|gb|EC944138.1|EC944138
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110360333|gb|EC923326.1|EC923326
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|30251796|gb|CB969529.1|CB969529
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|30135627|gb|CB920965.1|CB920965
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110699390|gb|EE076347.1|EE076347
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|22007319|gb|BQ792353.1|BQ792353
EST:     GCAAGCAGACTGTTCGTTTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|32246278|gb|CD712097.1|CD712097
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|351022708|gb|FQ428617.1|FQ428617
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|30301155|gb|CB977949.1|CB977949
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|161713787|gb|FC063781.1|FC063781
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|30132800|gb|CB918139.1|CB918139
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
EST: gi|110696914|gb|EE073445.1|EE073445
EST:     GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAG                         TGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG
genomic: GCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcac ... aacttggcagTGGAGAAATGATTCCAATAACCAGTGGAATGGGGCATATTATGGAGGGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACAGTGCCGAGGATGCACTACAGAGATTGAATGGGACTGTTATTGGCAAGCAGACTGTTCGTCTATCATGGGGCCGTAATCCGGCAAGCAAGCAGgtaattgcactttccatctagattcctaatgaaggttcccttagtcaactagagattattcctccatctcacttttagttattctattctggtctgcggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc