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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCGCAGTATTGGCTTTGATCTTGTATTTTGAACCTCGATATGGACAGACAAATATACTGGTTTACTTGGGCATTTGTTCATTAATGGGTTCACTTACGgtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcatttcattgtaacatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcag

Basic information

species Vitis vinifera
transcript Vv03s0038g01940.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g50180.1 (Oryza sativa), 5'ss of exon 5
ATCCGCAGTATTGGCTTTGATCTTGTATTTTGAACCTCGATATGGACAGACAAATATACTGGTTTACTTGGGCATTTGTTCATTAATGGGTTCACTTACGgtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcatttcattgtaacatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcag
|   |  ||    ||  |  |  | |  ||||||||||||||||| |||||||||||  || | ||  ||||||| || || |  ||||| ||||| || |||| | ||||    | ||   |   |||     | |  |   | |||  ||          |||  ||   |                                                                   
AGTAGTCGTGGCAGCACTAGTTCTCTTCTTTGAACCTCGATATGGTCAGACAAATATCATGATATATCTGGGCATCTGCTCTTCTATGGGATCACTAACAgtaagtgtgttttgctattggatgcacaatctagtggtaggcatatgtggttaacgaaccattggtattctgtag-----------------------------------------------------------------

upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G03390.1 (Glycine max), 5'ss of exon 5
ATCCGCAGTATTGGCTTTGATCTTGTATTTTGAACCTCGATATGGACAGACAAATATACTGGTTTACTTGGGCATTTGTTCATTAATGGGTTCACTTACGgtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcatttcattgta-acatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcag
 || | ||| ||||| |||||| |  | ||||||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||| | || ||||||||||||||||||||   | | |  ||    ||||              |   | |||     ||    |  || |  | | |||  | | |||||||| ||| |     | |   |||  || |||||                
TTCGGTAGTTTTGGCCTTGATCGTACACTTTGAACCTCGCTATGGACAGACTAATATGCTGGTCTACTTGGGAATTTGTTCATTAGTTGGCTCACTTACGgtaattatgttatgtctatctgtgatgaagt--------------ttcatattgata--ttgcaacacttgaactaactgtgtatacttgctactttgtaca----tgaaattttcaaa-atttcag--------------

upper sequence: Vv03s0038g01940.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G11230.1 (Glycine max), 5'ss of exon 1
ATCCGCAGTATTGGCTTTGATCTTGTATTTTGAACCTCGATATGGACAGACAAATATACTGGTTTACTTGGGCATTTGTTCATTAATGGGTTCACTTACGgtaattatgttgcctttttaagtctccaagtagctaggggcactctgttttttggaggtttatggcttttcatttcattgtaacatttgctactctgttcggtgctcagtctttggaacatttctcttgctgttctgcag
 || | ||| ||| | |||||| |  | ||||||||||  ||||||||||| || || ||||| |||||||| |||||||||||| | || |||||||||||||||||||   || | |  ||||    ||    | |     | |  | ||   |   ||    | |||    | | ||||  | |||||||| ||| |     | | | |||  ||  ||||                
TTCGGTAGTTTTGCCCTTGATCATACACTTTGAACCTCACTATGGACAGACTAACATGCTGGTCTACTTGGGAATTTGTTCATTAGTTGGCTCACTTACGgtaattatgt---ctgtct--gtct----gtgatgaag-----tttcatcttgata---ttgcaacgtttggactaactgta-tacttgctactttgtaca----tgaatttttc-aatttttcag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37189643|gb|CF608992.1|CF608992
EST:     CAAATATACTGGTTTACTTGGGCATTTGTTCATTAATGGGTTCACTTACG                         GTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGG
genomic: CAAATATACTGGTTTACTTGGGCATTTGTTCATTAATGGGTTCACTTACGgtaattatgt ... tgttctgcagGTTGTAAGCATAAAGGCTATTGGAATTGCTATAAAGCTTACTCTGGAGGGG