1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTTGGTGCTTTATTTATGGTAGTGACAGCATTCGTTATGACTAATGAGTCAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCTgtaagtttctcattaatgttaaatgaaggctttagaatgataataatgtttttattaggagaggaattaccttctcatctgactcgaggtaacagccaat...
species | Vitis vinifera |
transcript | Vv02s0087g00880.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCT GGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAGEST: gi|30126923|gb|CB912262.1|CB912262
genomic: CAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCTgtaagtttct ... gtctttgcagGGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAG
EST: CAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCT GGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAGEST: gi|30133139|gb|CB918478.1|CB918478
genomic: CAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCTgtaagtttct ... gtctttgcagGGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAG
EST: CAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCACAGTCTGCTATGCT GGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAGEST: gi|45771714|gb|CN007566.1|CN007566
genomic: CAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCTgtaagtttct ... gtctttgcagGGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAG
EST: CAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCT GGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAG
genomic: CAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCTgtaagtttct ... gtctttgcagGGAGTAGTTGCTTCTGCCATTAACTATGGGCTCCTGACATGGTCCAATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGGTGCTTTATTTATGGTAGTGACAGCATTCGTTATGACTAATGAGTCAACAGATTGGAGTTTGACGAAGTCTGAACTTTTCGCAGTCTGCTATGCTgtaagtttctcattaatgttaaatgaaggctttagaatgataataatgtttttattaggagaggaattaccttctcatctgactcgaggtaacagccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggtaa