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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGCTGTAGTCAGTGGGGCCATGACTTTCGCCCAGATTACAAAAATCTTGGCATCTTAAAGACTCAGTTTCCTGATGTTCCAGTAGTTGCTTTGACTgtatgtcatgttatatttttctctttttcttctttttcactctttgtcatgctctacaactttgatgactagttaaagattcttacattttatgcatttcccag

Basic information

species Vitis vinifera
transcript Vv02s0087g00070.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os11g48090.3 (Oryza sativa), 5'ss of exon 6
ACATTGCTGTAGTCAGTGGGGCCATGACTTTCGCCCAGATTACAAAAATCTTGGCATCTTAAAGACTCAGTTTCCTGATGTTCCAGTAGTTGCTTTGACTgtatgtcatgtta-tatttttctctttttcttctttttcactctttgtcatgctctacaactttgatgactagttaaagattcttacattttatgcatttcccag
||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||   ||||||||   ||||||  |  | ||||| |||||  ||   |  | || | | |  |||||    |  || | | ||             |||| | |||   |  ||| |  |  | | |||| ||||        
ACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAGAATCTTGGCATTTTAAAGGTCCAGTTTCCCAGTGTTCCTATGATAGCTTTAACTgtgagttgcgaaaataatatccattttttacaataattaaatttt-------------aactgtaatg-tgaaataaggcctgcttctttttttgcag-------

upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G34860.1 (Glycine max), 5'ss of exon 5
ACATTGCTGTAGTCAGTGGGGCCATGACTTTCGCCCAGATTACAAAAATCTTGGCATCTTAAAGACTCAGTTTCCTGATGTTCCAGTAGTTGCTTTGACTgtatgtc---atgttatatttttctctttttcttctttttcactctttgtcatgctctacaactttgatgactagttaaagattct-tacattttatgcatttcccag
||||||||||||||| ||||| ||||||||||| || || ||||| |  ||  | ||  | ||||| ||||| |||  ||||||  | ||||||||||||||| |||   || | |  ||| | |    |  | |   |  | |  ||   ||    ||    ||| ||   || ||     |||| |  ||   ||  ||||  |||
ACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTgtacgtctttatctcaagtttctgttaagtattgcaaataaaattattag-atttgatatgcttttcatacttaattttgatttctattaatgacatttatttttcag

upper sequence: Vv02s0087g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G31360.1 (Arabidopsis thaliana), 5'ss of exon 5
ACATTGCTGTAGTCAGTGGGGCCATGACTTTCGCCCAGATTACAAAAATCTTGGCATCTTAAAGACTCAGTTTCCTGATGTTCCAGTAGTTGCTTTGACTgtatgtcatgttatatttttctctttttcttctttttcactctttgtcatgctctacaactttgatga-ctagttaaagattcttacattttatgcatttcccag---
 ||||| |||||||||||||| ||||| |||||||| |||||||| ||  |  ||||  | || || ||||||||  | |||||  | || ||||| |||||||||    || | ||||  | | |    |    |     |||    |   |  ||| |  |   || || | |  |  ||  |    ||     |    |||    
TCATTGTTGTAGTCAGTGGGGTCATGATTTTCGCCCTGATTACAAGAACTTAAGCATTCTGAAAACCCAGTTTCCCAAAGTTCCCATGGTGGCTTTAACTgtatgt----ttttgttttcatttatgggataccctgtgagctt----aaattagacagcactagggagcttgcttcaccttactgtgcttatcataaggaccaattt