Sequence
atgc intronic sequence ATGC exonic sequenceCATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G34280.1 (Glycine max), 5'ss of exon 5
CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacag--
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CATTATATGCCTCCCTATGGCACTCCACCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCTATTCCTCCGgtattct-ttgtagatagtgctttc-ttatggatattatattgtaattaatca-tcataatttagaattcattaatcaatatttccatatttctaccaatacatttag
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 5
CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacag
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CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtatttt-ttataaactatgctttc-ttgaagttatcatgctga-atgattagctcatcaactac-tcttgcc-tcaaatttatacag------------------
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G01740.1 (Glycine max), 5'ss of exon 4
CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacag
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CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTATCCCCCTGGTGGCATTTATGCTCATCCATCCATGCCTCCGgtatttt-ttgtaaactatactttc-ttgaagttatcatgctga-atcattagctcatcaactac----tgttgcctcaaatttatacag----------------
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G15810.1 (Glycine max), 5'ss of exon 5
CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacag--
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CATATTATGCCTCCCTATGGCACTCCACCTCATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATTCCTCCGgtattct-ttgtagataatgctctc-ttatggatattatattgttattaatca-tcacaatttagaattcatttactaatatttgcatatttttatgaatttatttag
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G35530.1 (Arabidopsis thaliana), 5'ss of exon 5
CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacag
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CATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTATGTTGCAATGTATCCCCCAGGTGGCATGTACGCACATCCTTCAATGCCTCCGgtactgccaactgtagta-gattcaattgcagtgaacataa-attaaaatgtagctgttaattatatc------tttaatatgttccattctgtatcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699224|gb|EE076034.1|EE076034EST: TTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCG GGATCTTATCCTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCT
genomic: TTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttctt ... tttttaacagGGATCTTATCCTTTCAGTCCTTTTGCTATGCCTTCTCCAAATGGCATTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTATCCCCCTGGTGGCTTATATGCTCATCCATCTATTCCTCCGgtattttcttttggagcatgctttagtttcagttataatattgtcatcgtgtacttgctttctgcattccgctatctaaaatgctcaatgttttattttttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG