1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGCTGAGCAAACCCTCACTGAATGGTATTCCTTTGCTGGTACTGGGAAACAAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggacgctctttcacttccatgacctggaacctttcttgaccaaatttaaaaactccatggtgaatgctgtatcagtatccatagcctggttttcaatatgtgcattgttttggtaatgagaacaccattatgctttgcag
species | Vitis vinifera |
transcript | Vv00s0601g00030.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTCCTTCATGATCTCTTGEST: gi|110389472|gb|EC954310.1|EC954310
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTGEST: gi|30256144|gb|CB971987.1|CB971987
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTGEST: gi|110703370|gb|EE080157.1|EE080157
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTGEST: gi|110379513|gb|EC944712.1|EC944712
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTGEST: gi|32268293|gb|CD717452.1|CD717452
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTGEST: gi|46918918|gb|CN548247.1|CN548247
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTGEST: gi|30256212|gb|CB972055.1|CB972055
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTGEST: gi|30129400|gb|CB914739.1|CB914739
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTGEST: gi|33407863|gb|CF213490.1|CF213490
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
EST: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAAT GGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
genomic: AAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggac ... tgctttgcagGGGACTCAAATCAATTACTGACAGAGAAGTATGCTGCTTCATGATCTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGAGCAAACCCTCACTGAATGGTATTCCTTTGCTGGTACTGGGAAACAAAATCGACAAGCCAGGAGCTCTGTCCAAACACGCTTTGACTGAAGAAATgtaagtggacgctctttcacttccatgacctggaacctttcttgaccaaatttaaaaactccatggtgaatgctgtatcagtatccatagcctggttttcaatatgtgcattgttttggtaatgagaacaccattatgctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA