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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTTGAAGCATCAAAAAGGCTAAGTGTCAAACCTTCCAACTGCCTCGTCATTGAAGATTCACTgtaagtatcttaaatttttaatccattgcagatttgaatttattcttttataatagcatctgggcacagctcttcagcgacagatctctgtttaaatggt...

Basic information

species Vitis vinifera
transcript Vv00s0181g00130.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688581|gb|EC921621.1|EC921621
EST:     TCATTGAAGATTCACT                         ACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
genomic: TCATTGAAGATTCACTgtaagtatct ... attgtgtcagACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
EST: gi|122688643|gb|EC920309.1|EC920309
EST:     AAAAGGCTAAGCGTCAAACCTTCCAATTGCCTCGTCATTGAAGATTCACT                         ACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
genomic: AAAAGGCTAAGTGTCAAACCTTCCAACTGCCTCGTCATTGAAGATTCACTgtaagtatct ... attgtgtcagACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
EST: gi|122688609|gb|EC923003.1|EC923003
EST:     CTCGTCATTGAAGATTCACT                         ACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
genomic: CTCGTCATTGAAGATTCACTgtaagtatct ... attgtgtcagACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
EST: gi|122688550|gb|EC920300.1|EC920300
EST:     AAAAGGCTAAGCGTCAAACCTTCCAATTGCCTCGTCATTGAAGATTCACT                         ACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
genomic: AAAAGGCTAAGTGTCAAACCTTCCAACTGCCTCGTCATTGAAGATTCACTgtaagtatct ... attgtgtcagACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
EST: gi|122688646|gb|EC920398.1|EC920398
EST:     AAAAGGCTAAGCGTCAAACCTTCCAATTGCCTCGTCATTGAAGATTCACT                         ACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
genomic: AAAAGGCTAAGTGTCAAACCTTCCAACTGCCTCGTCATTGAAGATTCACTgtaagtatct ... attgtgtcagACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
EST: gi|122688569|gb|EC921114.1|EC921114
EST:     CATTGAAGATTCACT                         ACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
genomic: CATTGAAGATTCACTgtaagtatct ... attgtgtcagACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
EST: gi|122688616|gb|EC923325.1|EC923325
EST:     CGTCATTGAAGATTCACT                         ACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
genomic: CGTCATTGAAGATTCACTgtaagtatct ... attgtgtcagACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
EST: gi|122688561|gb|EC920714.1|EC920714
EST:     AAAAGGCTAAGCGTCAAACCTTCCAATTGCCTCGTCATTGAAGATTCACT                         ACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC
genomic: AAAAGGCTAAGTGTCAAACCTTCCAACTGCCTCGTCATTGAAGATTCACTgtaagtatct ... attgtgtcagACCTGGTGTTATGGCTGGTAAGGCTGCTGGAATGGAAGTGGTTGCTGTACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTTTTGAAGCATCAAAAAGGCTAAGTGTCAAACCTTCCAACTGCCTCGTCATTGAAGATTCACTgtaagtatcttaaatttttaatccattgcagatttgaatttattcttttataatagcatctgggcacagctcttcagcgacagatctctgtttaaatggt

- - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA