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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgggattcatttctccaaattagagaaatagatttcttgatctgattcttcagttgattttcatttcttaaattggagaaagaattttgtttc...

Basic information

species Vitis vinifera
transcript Vv18s0122g00190.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30329651|gb|CD012913.1|CD012913
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|26262702|gb|CA813765.1|CA813765
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAAAGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110387568|gb|EC952248.1|EC952248
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110398891|gb|EC965370.1|EC965370
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|351014365|gb|FQ437367.1|FQ437367
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110425437|gb|EC991822.1|EC991822
EST:     GCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110386869|gb|EC951501.1|EC951501
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|71857030|gb|DT006085.1|DT006085
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110732164|gb|EE107221.1|EE107221
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCANCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|26257553|gb|CA808616.1|CA808616
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|28959343|gb|CB339672.1|CB339672
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGCC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|26258319|gb|CA809382.1|CA809382
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|254916144|gb|GR904002.1|GR904002
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|28959153|gb|CB339578.1|CB339578
EST:     GGAAGATCTGCCCCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGCC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|30301103|gb|CB977897.1|CB977897
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|26257283|gb|CA808346.1|CA808346
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|71856841|gb|DT005896.1|DT005896
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110426779|gb|EC993200.1|EC993200
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110711159|gb|EE087374.1|EE087374
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110425239|gb|EC991621.1|EC991621
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|110379372|gb|EC944560.1|EC944560
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|30301035|gb|CB977829.1|CB977829
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|28960863|gb|CB340439.1|CB340439
EST:     GAAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|28959155|gb|CB339579.1|CB339579
EST:     GGAAGATCTGCCCCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGT-GCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|30137614|gb|CB922952.1|CB922952
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|28959315|gb|CB339658.1|CB339658
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGT-GCAGTC
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGTTTGGTTGCAGTC
EST: gi|27584720|gb|CB007415.1|CB007415
EST:     GGAAGATCTGCACCTTGGAAGCATACACTGGAAG                         GTCCGGATGACATGCCAGCACACATCAAATCTTCAATGT
genomic: GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgg ... accttttcagGTCCGGATGACATGCCAGCACACATCAAATCTTCAATGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGATCTGCACCTTGGAAGCATACACTGGAAGgtttgtatgggattcatttctccaaattagagaaatagatttcttgatctgattcttcagttgattttcatttcttaaattggagaaagaattttgtttc

- - - - - - -  TGGAAG
- - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa