1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGGACAGGAGAGATTTAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGgtatgttgtttcatctttttgcgcgttgctgttttcccctgtttgtcatctaaatgacttcaatatttgttcatttgatgttccttaaaagctaatacaa...
species | Vitis vinifera |
transcript | Vv18s0001g15090.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGG TGTATGATGTAACACGGCGTGAAACATTTACAAATCTATTTGACATATGGGEST: gi|32246016|gb|CD711835.1|CD711835
genomic: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGgtatgttgtt ... tctggtacagTGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGG
EST: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGG TGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGGEST: gi|32245511|gb|CD711330.1|CD711330
genomic: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGgtatgttgtt ... tctggtacagTGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGG
EST: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGG TGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGGEST: gi|110731009|gb|EE108741.1|EE108741
genomic: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGgtatgttgtt ... tctggtacagTGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGG
EST: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGG TGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGGEST: gi|110724343|gb|EE100090.1|EE100090
genomic: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGgtatgttgtt ... tctggtacagTGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGG
EST: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGG TGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGGEST: gi|110394327|gb|EC959107.1|EC959107
genomic: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGgtatgttgtt ... tctggtacagTGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGG
EST: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGG TGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGG
genomic: TAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGgtatgttgtt ... tctggtacagTGTATGATGTAACACGGCGTGAAACATTTACAAATCTATCTGACATATGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGACAGGAGAGATTTAGAACACTTACTAGTTCATACTACAGAGGAGCTCAGGGCGTAATAATGGgtatgttgtttcatctttttgcgcgttgctgttttcccctgtttgtcatctaaatgacttcaatatttgttcatttgatgttccttaaaagctaatacaa
- - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagcta