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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCTGCATATGAGAAGGCAGCAGAGATCTTGCTCCGCTGTGAAGAAGAGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCATCATGCACAGgtgcattaattaatatgctatatacatcataatgttttatgttagcaggctttttcttttattttcaacaaaacaatttgagtgaatcactgtaattgttttcaacctggatacatgccttgtgtttag

Basic information

species Vitis vinifera
transcript Vv17s0000g09890.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G36580.1 (Glycine max), 5'ss of exon 4
AGTTTCTGCATATGAGAAGGCAGCAGAGATCTTGCTCCGCTGTGAAGAAGAGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCATCATGCACAGgtgcattaat--taatatgctatatacatcataatg--ttttatgttagcaggctttttcttttattttcaacaaaacaatttgagtgaatcactgtaattgttttcaacctggatacatgccttgtgtttag
 || |  || ||||||||||||| ||||||||||||  |   ||| |  ||||||||||||||||||||||||||  ||||||||||||| |||||||||||||| | ||  |||| || |||||  || ||  |    | | ||||      | | || | | ||  |                                                                
TGTGTTAGCTTATGAGAAGGCAGAAGAGATCTTGCTGAGGCCTGAGGCTGAGATTGACAGGCCAGAGTTGCTTTCTTTAGTTCAGATTCACCATGCACAGgtgcaatgatcttaatttgatatattaatgattctaatctctctgttcattaacatattttatcatccttttag-----------------------------------------------------------

upper sequence: Vv17s0000g09890.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G18330.1 (Glycine max), 5'ss of exon 4
AGTTTCTGCATATGAGAAGGCAGCAGAGATCTTGCTCCGCTGTGAAGAAGAGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCATCATGCACAGgtgcattaattaatatgctatatacatcataatgttttatgttagcaggctttttcttttattttcaacaaaacaatttgagtgaatcactgtaattgttttcaacctggatacatgccttgtgtttag
 || |  |||||||||||||||| ||||||||||||  |   ||| |  |||||||||||||| || ||||||||  ||||||||||||| |||||||||||||  | ||    ||   ||| |     ||||| ||    |     || |  ||    ||||||    | ||   ||| ||                                               
TGTGTTAGCATATGAGAAGGCAGAAGAGATCTTGCTGAGGCCTGAGGCTGAGATTGACAGGCCTGAATTGCTTTCTTTAGTTCAGATTCACCATGCACAGgtgcgatgatcttaatttgatagat----taatgattctaatctctcggttcattaacatatttt----ataatccttttag-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71859945|gb|DT009000.1|DT009000
EST:     AGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCATCATGCACAG                         TGCCTTCTTCTAGGAAGTTCAGGTGATCATAGTGCAGACAAAGAACTTGAA
genomic: AGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCATCATGCACAGgtgcattaat ... ttgtgtttagTGCCTTCTTCTAGGAAGTTCAGGTGATCATAGCGCAGACAAAGAACTTGAA