1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGTTGGAGTTGTCTGAAGACAAAATTCCAGGCTTAACTGAGATCCTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGGgtagacctcttgaattcatctcccgcataaagtctcatgtcttttttctattcattgcctattaaaaacaattatttacttggggtttcaattttttgcag
species | Vitis vinifera |
transcript | Vv17s0000g01720.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGG GACAGGATTTTGTCCCEST: gi|33405708|gb|CF211335.1|CF211335
genomic: AGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGGgtagacctct ... ttttttgcagGACAGGATTT-GTCCC
EST: AGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGG GACAGGATTTGTCCCCAATTGACTTGATTAATGTCCAGCAATTTGCGCAGAEST: gi|33404147|gb|CF209774.1|CF209774
genomic: AGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGGgtagacctct ... ttttttgcagGACAGGATTTGTCCCCAATTGACTTGATTAATGTCCAGCAATTTGCGCAGA
EST: AGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGG GACAGGATTTGTCCCCAATTGACTTGATTAATGTCCAGCAATTTGCGCAGAEST: gi|161720525|gb|FC070912.1|FC070912
genomic: AGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGGgtagacctct ... ttttttgcagGACAGGATTTGTCCCCAATTGACTTGATTAATGTCCAGCAATTTGCGCAGA
EST: AGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGG GACAGGATTTGTCCCCCATTGACTTGATT
genomic: AGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGGgtagacctct ... ttttttgcagGACAGGATTTGTCCCCAATTGACTTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTGGAGTTGTCTGAAGACAAAATTCCAGGCTTAACTGAGATCCTTGGAGATGAAGATAAAGCAAAGGAGATTGTGGAAGCTGCCAAAGCATCCATGGgtagacctcttgaattcatctcccgcataaagtctcatgtcttttttctattcattgcctattaaaaacaattatttacttggggtttcaattttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC