Sequence
atgc intronic sequence ATGC exonic sequenceAGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGgtatggttttttatgcattttttttaatcatgttctattggattctctggccatggggttgaactttgaccccattttcaagggttcaaacattgatatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G168654_T01 (Zea mays), 5'ss of exon 11
AGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGgtatggttttttatgcattttttttaatcatgt------tctattg--gattct---ctggccatggggttgaactttgaccc-------cattttcaagggttcaa---acattgatatg---------------------------------------------------------------------
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AGTAAGTCATCTGAAGCAGAAATGGATTCACTGAAGGATGAATATCACCAAAGAGTAGCAACTCTTGAAAGGAAGgtgggggcacattaccattttttcttgttacttgatgcttctattgtcaattggtaattgcacatagtttccaaatttagtattgatgatcatttgaaagggttaggtgcacaatgctacgatttggacatgttagtatgttacattcgcttgcattgttgcaaatgcatcacttacttgttttttgtag
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G43330.1 (Glycine max), 5'ss of exon 7
AGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGgtatggttttttatgcatttt--ttttaatcatgttctattg--gattctctggccatggggttgaactttgaccccattttcaa-gggttcaaacattgatatg
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AGAAAATCCAATGAGGCAGAAGTTGAGTCTTTGCGAGAGGAATACCATCAGAGAGTTGCAACTCTTGAGAGAAAGgtatcacttttcgtaaatcttatttttttttatgcttaattatcagtaatttaactcagatgcataattgaaaaattgtgtatagtgtgtttagtctata-----
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 5
AGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGgtatggttttttatgcattttttttaat---catgttctattg--gattctctggccatggggttgaactttgaccccattttcaagggttcaaacattgatatg
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AGAAAATCCAATGAGGCAGAAGTTGAGTCTTTGCGAGAGGAATACCATCAGAGAGTTGCAACTCTTGAGAGAAAGgtatcacttttcgtaaatcttatttgttttttgtgcttaattatcagtaatttaactaagatgcataattaaaaa---attgtgtagtgtttagtctatacaa--
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G79830.3 (Arabidopsis thaliana), 5'ss of exon 5
AGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGgtatggt-----tttttatgcattttttttaatcatgttctattggattctctggccatggggttgaactttgaccccattttcaagggttcaaacattgatatg
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AGGAAATCTAACGAAGCTGAAGTCGAGTCTTTGCGAGAAGAATACCATCAGAGAGTTGCAACTCTTGAGAGGAAGgtattatatcttttatcattcttctctttcaattctcttcttttc-attatatatatatatgccttcacagtg--cttatctttgtag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34544079|gb|CF512311.1|CF512311EST: AGTCTTTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAG GTATATGCCCTTACTAAGGAAAGGGATACACTACGAGGAGAACATAACAGA
genomic: AGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGgtatggtttt ... tatgtttcagGTATATGCCCTTACTAAGGAAAGGGATACACTACGAAGAGAACATAGCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAAAATCCAATGAAGCAGAAACTGAGTCTCTGCGAGAGGAATACCATCAAAGAGTAGCAGCTCTTGAAAGGAAGgtatggttttttatgcattttttttaatcatgttctattggattctctggccatggggttgaactttgaccccattttcaagggttcaaacattgatatg
- - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA