Sequence
atgc intronic sequence ATGC exonic sequenceAGTTTCTGAAAGTCTGAAGGTGCTTCCTGGACAGGTTGTTGTTCCTGCAGTTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAGgtaccattctgctttcattcctgcatttaaatgaattgcccgagtgttttagcggttcattttgttctcttcttgaatctttggaatccactccattgtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G25200.1 (Glycine max), 5'ss of exon 7
AGTTTCTGAAAGTCTGAAGGTGCTTCCTGGACAGGTTGTTGTTCCTGCAGTTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAGgtaccattctgctttcattcc--tgcatttaaatga---attgcccgagtgttttagcggttcattttgttctcttcttgaatctttggaatccactccattgtc
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AGTTTCTGCATCTGTACAAGTGCTTCCTGGAAAGGTTTTGGTTCCTGCAGCTGTTGATCAAGTTCAGGGCCAAGCACTAGCAGCACTGCAAGTTTTAAAGgtaattatttgttcttattctcatgtatcaaggtgacataatgctct-gtatatttatagtttagttctagttttttttatatatattttttacactggtt----
upper sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G30160.1 (Glycine max), 5'ss of exon 3
AGTTTCTGAAAGTCTGAAGGTGCTTCCTGGACAGGTTGTTGTTCCTGCAGTTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAGgtaccattctgctttcattcc--tgcatttaaatga--attgc-ccgagtgt-tttagcggttcattttgttctcttcttgaatctttggaatccactccattgtc
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AGTTTCTACAGCTGTAAAAGTGCTTCCGGGAAAGATTTTGGTTCCTGCAGCTGTTGATCAAGCTCAGGGCCAAGCACTAGCTGCATTGCAAGTTTTAAAGgtagttatttgttcttattctcatgtatcaaggtgactataatgctatgtgcatttatagtttaattctagtttttacgtatatatttacactggttatt------
upper sequence: Vv16s0050g00600.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G37850.1 (Glycine max), 5'ss of exon 5
AGTTTCTGAAAGTCTGAAGGTGCTTCCTGGACAGGTTGTTGTTCCTGCAGTTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAGgtaccattctgctttcattcctgcatttaaatgaattgcccg------agtgttttagcggttcattttgttctcttcttgaatctttggaatccactccattgtc
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AGTTTCTTCAGTTGTACAGGTGCTTCCTGGAAAGGTTTTGGTTCCTGCTGCTGTCGATCAAGTTCAGGGACAAGCATTAGCTGCTTTGCAAACTCTAAAGgtatttctttgttcttattcttatttttaaagggatagtgggtcaaacattatttttgtgatgcaaaatgactgcacattgaag----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161719035|gb|FC067655.1|FC067655EST: TTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAG GTCATCGAACCTGATGTTCAACCTAGCGATCTATGTACACGTCGTGAGTTT
genomic: TTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAGgtaccattct ... atcttttcagGTCATCGAACCTGATGTTCAACCTAGCGATCTATGTACACGTCGTGAGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTTTCTGAAAGTCTGAAGGTGCTTCCTGGACAGGTTGTTGTTCCTGCAGTTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAGgtaccattctgctttcattcctgcatttaaatgaattgcccgagtgttttagcggttcattttgttctcttcttgaatctttggaatccactccattgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaa