Sequence
atgc intronic sequence ATGC exonic sequenceATTTTTACAATTGGAACCGGGTGAAGCTAAGATATTGTGATGGAGCCTCATTTGCTGGGGATGCCAAGTTTGACAATGGGgtttgtctcttacccaacctctttttgtcacatgttggtctttgtcttccacctttttaccaagtttttaacatatattacctaacatttctcttttaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g00570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G37890.1 (Glycine max), 5'ss of exon 4
ATTTTTACAATTGGAACCGGGTGAAGCTAAGATATTGTGATGGAGCCTCATTTGCTGGGGATGCCAAGTTTGACAATGGGgtttgtctcttacccaacctctttttgtcacatgttggtctttgtcttccacctttttaccaagtttttaac---atatattacctaacatttctcttttaat--
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ATTTTTACAATTGGAACCGTGTGAAGCTGAGATATTGTGATGGAGCTTCATTTACTGGAGACGCTGTGTTCACTAACAAGgtaattttctcaac--gcctctacc---caaacaaagggattaaaaaagaaagaaggatataaatctttggctaaatgagatatcttccattcattcctctatca
upper sequence: Vv16s0050g00570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G29930.2 (Glycine max), 5'ss of exon 4
ATTTTTACAATTGGAACCGGGTGAAGCTAAGATATTGTGATGGAGCCTCATTTGCTGGGGATGCCAAGTTTGACAATGGGgtttgtctcttacccaacctctttttgtcacatgttggtctttgtcttccacctttttaccaagttt-ttaacatatattacctaacatttctcttttaat-
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ATTTTTACAATTGGAACCGTGTGAAGCTGAGATATTGTGATGGGGCTTCATTTACTGGAGATGCTGTGTTCACTAACAAGgtaattttctcaac--gcctctacccaaacaaaggaattaaaaaagaaagaaggatacaaatcgttggttaaatgagaatgtcttccattcattcctctatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30251614|gb|CB969347.1|CB969347EST: GATATTGTGATGGAGCCCCATTTGCTGGGGATGCCAAGTTTGACAATGGG ACCTCAATACTCTACTTTAGAGGGCAGAAGATTTGGCGAGCAATAATTAAT
genomic: GATATTGTGATGGAGCCTCATTTGCTGGGGATGCCAAGTTTGACAATGGGgtttgtctct ... aaatgaacagACCTCAATACTCTACTTTAGAGGGCAGAAGATTTGGCGAGCAATAATTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTTTACAATTGGAACCGGGTGAAGCTAAGATATTGTGATGGAGCCTCATTTGCTGGGGATGCCAAGTTTGACAATGGGgtttgtctcttacccaacctctttttgtcacatgttggtctttgtcttccacctttttaccaagtttttaacatatattacctaacatttctcttttaat
- - - - - - - - - - - - - - - - - - - GATGGA