1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGCACAGAATCTGACCAGGACATCCCTGAAGAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgcttttatcttaacatcaaagttccattagttgagttgttttataactttttcttataagaaactggagttttgttataattagatgtattgttga...
species | Vitis vinifera |
transcript | Vv16s0039g02270.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTG GCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAGEST: gi|110719175|gb|EE096848.1|EE096848
genomic: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgctttt ... tgtatttcagGCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAG
EST: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTG GCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAGEST: gi|27584835|gb|CB007530.1|CB007530
genomic: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgctttt ... tgtatttcagGCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAG
EST: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTG GCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAGEST: gi|30125898|gb|CB911237.1|CB911237
genomic: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgctttt ... tgtatttcagGCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAG
EST: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTG GCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAGGTEST: gi|161711399|gb|FC059943.1|FC059943
genomic: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgctttt ... tgtatttcagGCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGC----
EST: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTG GCATGATTGGGACAAACTGAAGAATEST: gi|110686390|gb|EE063974.1|EE063974
genomic: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgctttt ... tgtatttcagGCATGATTGGGACAAACTGAAGAAT
EST: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTG GCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAGEST: gi|110698756|gb|EE076614.1|EE076614
genomic: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgctttt ... tgtatttcagGCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAG
EST: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTG GCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAGEST: gi|161718060|gb|FC067589.1|FC067589
genomic: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgctttt ... tgtatttcagGCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAG
EST: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTG GCATG-TTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAG
genomic: GAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgctttt ... tgtatttcagGCATGATTGGGACAAACTGAAGAATTTGCTATCCTTCCAGTTGAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCACAGAATCTGACCAGGACATCCCTGAAGAAGAAGGTAGAGGCATATTGGAAGTCATGGCATCCACCGGAAAGTTTTGgtatgcttttatcttaacatcaaagttccattagttgagttgttttataactttttcttataagaaactggagttttgttataattagatgtattgttga
- - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa