1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTATTGATGACTATGATTATGTATTTTCCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtataaaccttaaactgagaatcttatgtttgaattttataaatcagaactgcccatcaaatttattttaactcaccattctggtggacaaatac...
species | Vitis vinifera |
transcript | Vv15s0046g03520.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|30255051|gb|CB971498.1|CB971498
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110701264|gb|EE078642.1|EE078642
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|351014077|gb|FQ434229.1|FQ434229
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|22015208|gb|BQ800242.1|BQ800242
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: GGAAGCTCA-TGGCACCCAG AGCTTGAAGACATTTC-TGGAGAAGAAAAGCTGAAGEST: gi|351029490|gb|FQ436884.1|FQ436884
genomic: GGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110722626|gb|EE099031.1|EE099031
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110689404|gb|EE065600.1|EE065600
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|294966590|gb|GW837725.1|GW837725
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|351052425|gb|FQ452458.1|FQ452458
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110369745|gb|EC933913.1|EC933913
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|30323265|gb|CD006527.1|CD006527
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|30296186|gb|CB972980.1|CB972980
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGACTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110374344|gb|EC939025.1|EC939025
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|349826399|gb|FQ417896.1|FQ417896
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|349822047|gb|FQ408376.1|FQ408376
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|30253357|gb|CB970908.1|CB970908
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|351056098|gb|FQ453560.1|FQ453560
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|349808339|gb|FQ405483.1|FQ405483
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|30254481|gb|CB971226.1|CB971226
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|156736254|gb|EV240375.1|EV240375
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110388071|gb|EC952787.1|EC952787
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|161711444|gb|FC061209.1|FC061209
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGEST: gi|349824204|gb|FQ417591.1|FQ417591
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|37189632|gb|CF608981.1|CF608981
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|351019470|gb|FQ429605.1|FQ429605
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGACGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|27579428|gb|CB002123.1|CB002123
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|27580564|gb|CB003259.1|CB003259
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110384439|gb|EC948876.1|EC948876
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: GCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|351053383|gb|FQ455719.1|FQ455719
genomic: GCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|77584263|gb|DV221204.1|DV221204
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110708707|gb|EE086556.1|EE086556
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|351019263|gb|FQ429423.1|FQ429423
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|71867285|gb|DT016340.1|DT016340
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|349833445|gb|FQ420191.1|FQ420191
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|161717186|gb|FC064703.1|FC064703
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|33406828|gb|CF212455.1|CF212455
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|27579427|gb|CB002122.1|CB002122
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110400084|gb|EC966626.1|EC966626
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|33410547|gb|CF216174.1|CF216174
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAGEST: gi|110707835|gb|EE084684.1|EE084684
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
EST: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAG AGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
genomic: CCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtata ... ctttatgcagAGCTTGAAGACATTTCTTGGAGAAGAAAAGCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATTGATGACTATGATTATGTATTTTCCGAAAATGGTCTAGTGGCTCATAAAGATGGGAAGCTCATTGGCACCCAGgtattgtataaaccttaaactgagaatcttatgtttgaattttataaatcagaactgcccatcaaatttattttaactcaccattctggtggacaaatac
- - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggacaaa