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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgattaacaaactcatttggcattcttgttcgataaataggacttccgcatcgtttctctggagaaaaaacaaagctactttttagttttaatggtttgagctactgttatcgtatgttgacacctgtgttttccag

Basic information

species Vitis vinifera
transcript Vv15s0046g02280.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0046g02280.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ34378 (Selaginella moellendorffii), 5'ss of exon 4
GTCCGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgattaacaaactcatttggcattcttgttcgataaataggacttccgcatcgtttctctggagaaaaaacaaagctactttttagttttaatggtttgagctactgttatcgtatgttgacacctgtgttttccag
|||||| || ||||| || || || ||||||||||| |||||||| ||||||||||| |||      | |   | |  | | |    |  | || ||  | |  | || |                                                                                    
GTCCGGCTCCGTGTGCTTGGACGTGATCAACCAAACGTGGAGCCCAATGTTCGgtaaagat-----gatttgctcgaaagtttcaagctctgaa-agttcgttggtatag------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706781|gb|FC055498.1|FC055498
EST:     CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG                         ATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
genomic: CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgatta ... tgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
EST: gi|351029514|gb|FQ436908.1|FQ436908
EST:     CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG                         ATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
genomic: CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgatta ... tgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
EST: gi|46918632|gb|CN547961.1|CN547961
EST:     CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG                         ATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
genomic: CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgatta ... tgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
EST: gi|110420607|gb|EC986882.1|EC986882
EST:     CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG                         ATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
genomic: CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgatta ... tgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
EST: gi|34550367|gb|CF518585.1|CF518585
EST:     CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG                         ATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
genomic: CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgatta ... tgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
EST: gi|83274683|gb|DV938779.1|DV938779
EST:     CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG                         ATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
genomic: CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgatta ... tgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
EST: gi|351037950|gb|FQ465188.1|FQ465188
EST:     CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCG                         ATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA
genomic: CGGATCAGTGTGTTTAGATGTTATCAACCAAACCTGGAGCCCTATGTTCGgtaatgatta ... tgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCA