1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGAGAAGCGGTTATATCTAGTTTTTGAGTATCTGGACTTGGATCTGAAGAAGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgcaatcttctgacttttgaaggttcctgcattatatattttgggactatttttcttgttttaatatgaatgattaagactttaattatcctc...
species | Vitis vinifera |
transcript | Vv15s0045g00310.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGEST: gi|30128118|gb|CB913457.1|CB913457
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAGAGATTTACGTCTGATATAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATACGEST: gi|110732023|gb|EE106947.1|EE106947
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGEST: gi|71875892|gb|DT024947.1|DT024947
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGEST: gi|30127193|gb|CB912532.1|CB912532
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCEST: gi|110716217|gb|EE091004.1|EE091004
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCC
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGEST: gi|29781538|gb|CB346072.2|CB346072
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGEST: gi|30126104|gb|CB911443.1|CB911443
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGEST: gi|161706121|gb|FC056257.1|FC056257
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGEST: gi|110702955|gb|EE079378.1|EE079378
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGGEST: gi|30126370|gb|CB911709.1|CB911709
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
EST: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAG ATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
genomic: AGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgc ... tcctttgcagATGTTCCTGCATCAGATTCTCCGTGGTATTGCTTATTGTCATTCTCATAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAGCGGTTATATCTAGTTTTTGAGTATCTGGACTTGGATCTGAAGAAGCACATGGATTCATCTCCGGATTTTGCCAAAGATTTACGTCTGATAAAGgtgactctgcaatcttctgacttttgaaggttcctgcattatatattttgggactatttttcttgttttaatatgaatgattaagactttaattatcctc
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