Sequence
atgc intronic sequence ATGC exonic sequenceAGTAAGAGAGAACAAACTGTCATAGTAGAGTGCAGAGGCCATGATGCTGCTCGGTTCCACAGCATCGATCGTGCTCATGGgtaaaccatcttggaatgacctgattactctgaatgcactacattctttgggaattttctttttattgttcaatgatgtttattgtcattctgttagctc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0108g01480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G05910.1 (Glycine max), 5'ss of exon 4
AGTAAGAGAGAACAAACTGTCATAGTAGAGTGCAGAGGCCATGATGCTGCTCGGTTCCACAGCATCGATCGTGCTCATGGgtaaaccatcttggaatgacctgattactctgaatgcactacattctttgggaattttctttttattgttcaatgatgtttattgtcattctgttagctc--
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ACGAAGAAAGAACAAGCCACTGTTGTGGAGTGCAAAGGCCATGATGCTGCTCGGTTCCACAGCATTGATCATGCTCATGGgtaaagcatagtgtttt--cctgtataatttctttttgagggctcacctgggttttatgattttgttttatattagtgagtataattttcatgctaaacagt
upper sequence: Vv14s0108g01480.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G03430.2 (Glycine max), 5'ss of exon 2
AGTAAGAGAGAACAAACTGTCATAGTAGAGTGCAGAGGCCATGATGCTGCTCGGTTCCACAGCATCGATCGTGCTCATGGgtaaaccatcttggaatg--acctgattactctgaatgcactacattctttgggaattttctttttattgttcaatgatg-tttattgtcattctgt-tagctc
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GCAAAGAAAGAACAAGCCACTGTTGTGGAGTGCAAAGGCCATGATGCTGCTTGGTTCCACAGCATTGATCATGCTCATGGgtaaaacatagtggtttcctgtataatttctttttgagcact----cacctgggttttatgattttgttttataattttaattgattattagtctgtataatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30295728|gb|CB972522.1|CB972522EST: TGATGCTGCTCGGTTCCACAGCATCGATCGTGCTCATAG GTGGGAGATGGATGTTGTGGGTATGGTTGAGCAGAAGCATGGGAAGAACAA
genomic: TGATGCTGCTCGGTTCCACAGCATCGATCGTGCTCATGGgtaaaccatc ... ttttagacagGTGGGAGATGGATGTTGTGGGTATGGTTGAGCAGAAGCATGGGAAGAACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGTAAGAGAGAACAAACTGTCATAGTAGAGTGCAGAGGCCATGATGCTGCTCGGTTCCACAGCATCGATCGTGCTCATGGgtaaaccatcttggaatgacctgattactctgaatgcactacattctttgggaattttctttttattgttcaatgatgtttattgtcattctgttagctc
- - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCTGCT