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TACCTTGGCTTTGCTGCATCGGATGAATACTGCACGCCACGTGTAATTGAATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtattatttttaaaatacatatgcttagttattcgtctatttaaatttctactgacacatttcatctatcag
species | Vitis vinifera |
transcript | Vv14s0068g01300.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349823630|gb|FQ415040.1|FQ415040
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349832894|gb|FQ423016.1|FQ423016
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351033557|gb|FQ447716.1|FQ447716
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351041981|gb|FQ456191.1|FQ456191
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351054108|gb|FQ450190.1|FQ450190
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|352773004|gb|FQ470619.1|FQ470619
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351046320|gb|FQ448625.1|FQ448625
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCANATTTTGTTGEST: gi|351054020|gb|FQ441786.1|FQ441786
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349808540|gb|FQ405684.1|FQ405684
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTTGCAAATTTTGTTGEST: gi|349807664|gb|FQ402055.1|FQ402055
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349820492|gb|FQ408442.1|FQ408442
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTTGCAAATTTTGTTGEST: gi|349822627|gb|FQ412891.1|FQ412891
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351015401|gb|FQ447230.1|FQ447230
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349819861|gb|FQ404535.1|FQ404535
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349819166|gb|FQ412060.1|FQ412060
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTTGCAAATTTTGTTGEST: gi|349820920|gb|FQ408628.1|FQ408628
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351056259|gb|FQ453721.1|FQ453721
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|352782149|gb|FQ470051.1|FQ470051
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351037559|gb|FQ462542.1|FQ462542
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349813001|gb|FQ411241.1|FQ411241
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351021667|gb|FQ437052.1|FQ437052
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349822644|gb|FQ412908.1|FQ412908
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATG-CTGCAAATTTTGTTEST: gi|352789617|gb|FQ476215.1|FQ476215
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTC-GCAAATTTTGTT
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351032559|gb|FQ458924.1|FQ458924
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|352772806|gb|FQ473844.1|FQ473844
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349808891|gb|FQ406741.1|FQ406741
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|351032958|gb|FQ461847.1|FQ461847
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCACTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349823382|gb|FQ402581.1|FQ402581
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349826514|gb|FQ418605.1|FQ418605
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349810608|gb|FQ402851.1|FQ402851
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTGEST: gi|349817896|gb|FQ407885.1|FQ407885
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTTGCAAATTTTGEST: gi|351057058|gb|FQ448575.1|FQ448575
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTG
EST: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTG GCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
genomic: ATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtat ... catctatcagGCACAATAATGATGCATAATGAATTGGAAAAGTATGTCGCAAATTTTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTTGGCTTTGCTGCATCGGATGAATACTGCACGCCACGTGTAATTGAATCATTGAAGAAATTTTCACCAAGCACCTGTAGTAGCCGGGCTGATGGTGgtatgtgtattatttttaaaatacatatgcttagttattcgtctatttaaatttctactgacacatttcatctatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT