Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAATCCAAGgtttctaattactaatttaaacaagtacagaaatatctattgatatatatatatatattgtctattttctcatgttcatcacatttgctgatcccattgttgttttcttaatggctgtag

Basic information

species Vitis vinifera
transcript Vv14s0068g01000.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 4
GGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAATCCAAGgtttctaattactaatttaaacaagtacagaaatatctattgatatatatatatatattgtctat--tttctcatgttcatcacatttgctgatcccattgttgttttcttaatggctgtag
||| |||||||||||||||||||  || || || |||||||||||||| |  ||||| |||||||| |||||||||||||| || ||||||||||| ||||||| |   || |    ||     ||||           |||| ||   |   | |  ||   ||  || || ||||   | |  |||||||||                            
GGAAAAGAGCAACTTCAAGATAGTGACGGATGATGAGATTGATGTTGCACATTCAGGCCAGTATCTTCTAAATCTTCCCATAACGGTTGATGAATCTAAGgtttgtgcataatggcatatg---gtac-----------ttgagatgcttgattttgctgctaatagttgctgatgtgtgt-atttttgctgatgaag------------------------

upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 4
GGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAATCCAAGgtttctaattactaat-ttaaacaagtacagaaatatctattgatatatatatatatattgtc--tattttctcatgttcatcacatttgctgatcccattgttgttttcttaatggctgtag
||| |||||||||||||||||||  ||||| || |||||||||||||| |  ||||| || ||||| |||||||||||||| || ||||||||||| ||||||| |   || ||||  |     | |  | ||   |   |||| ||   |   | |  ||    || || || ||||   |    |||||||||                            
GGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAATCTAAGgtttgtgcataataatgctcctttaatggaaaatggtaccttgagatgcttgattttgctgctaatagttgctgatgtctgtattttttgctgatgaag------------------------

upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G07370.1 (Glycine max), 5'ss of exon 4
GGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAATCCAAGgtttctaattactaatttaaacaagtacagaaatatctattgatatatatatatatattgtctattttctcatgttcatcacatttgctgatcccattgttgtt--ttcttaatggctgtag--------------
| | || |||||||||||||| || ||| | |||||||||||| |||| || || || |||||||| |||||||||||||| |||||  ||||||| ||||||   ||  | |  ||    |  |||    | ||| ||     ||| |||||| |    | || |  | || ||   |     |   || |     |||| |   ||  | ||  ||||                
GAAAAAAAGCAACTTCAAGATTGCTACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATCTTCTAAATCTTCCCATTACAGTAAATGAATCTAAGgttagcaacca-tgtttctgtcttgtaactcattatgtacatgcata-atatatgtgcc-tttaatggcacaggtcactttggatgcttggttgtgctgttatcagttgctgatctctgtgttttaccaaatgtag

upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G26360.1 (Glycine max), 5'ss of exon 4
GGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAATCCAAGgtttctaattactaatttaaacaagtacagaaatatctattgatatatatatatatattgtctattttctcatgttcatcacatttgctgatcccattgttgtt--ttcttaatggctgtag--------------
| | || |||||||||||||| |||||| | |||||||||||| |||| || || || |||||| | ||||||||||| || |||||  ||||||| ||||||   ||  | |  ||    |  |||    | ||| ||     ||| |||||| |    | || |  |  | ||   |     |   ||||     |||| |   ||  | ||  || |                
GAAAAAAAGCAACTTCAAGATTGCAACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATATTCTAAATCTTCCAATTACAGTAAATGAATCTAAGgttagcaacca-tgtttctgtcttgtaactcattatatacatgcata-atatatgtgcc-tttaatggcataggtcactttagatgcttgattgtgctgttatcagttgctgatctctatgttctgctgaatgtag

upper sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G19340.1 (Arabidopsis thaliana), 5'ss of exon 4
GGAGAAGAGCAACTTCAAGATAGCAACTGAGGAAGAGATTGATGTTGCTCTCTCAGGGCAGTATCTCCTAAATCTTCCCATCACAGTTGATGAATCCAAGgtttctaattactaatttaaacaagtacagaaatatctattgatatatatatatatattgtctattttctcatgttcatcacatttgctgatcccattgttgttttcttaatggctgtag
||||||||||||||| || ||| ||| | | |||||||| || ||||| | ||| ||||||||||| || ||||||||||||| ||||||||| || ||||||| |    || || ||  || | | |     | | |   |  ||   |||| | || || |  || ||  || |      |                                     
GGAGAAGAGCAACTTTAAAATAACAAGTAATGAAGAGATGGAAGTTGCACACTCTGGGCAGTATCTTCTCAATCTTCCCATCAAAGTTGATGAGTCTAAGgtttgtttaaacaaactttcactaatgcttgtgtgt-tgccgggattcttataaa-atagttttcttgcttttggtggatgaag------------------------------------