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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATGATGCTGTTCTTGCAGGTGACAATACACTCGTTTCCTGTTCTTCAGATACTACCCTCAAGgtttgtcaatttgaatccatcattgttggttttttaacctatggaaaatctgattatttttattgacttatttcccttattgagatacaccag

Basic information

species Vitis vinifera
transcript Vv14s0030g01350.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G40360.1 (Glycine max), 5'ss of exon 4
GTTAATGATGCTGTTCTTGCAGGTGACAATACACTCGTTTCCTGTTCTTCAGATACTACCCTCAAGgtttgtcaatt-tgaatccatcattgtt--ggtt--ttttaacctatggaaaatctgattatttttattgacttatttcc-cttattgagatacaccag
||||||||||||||| ||| |||||| | |||||| ||||| |||||||||||||| ||||| |||||||||  |||   |     |  |||||    |   |  |  |   |    |||   |   |  |||   | |||||| | | | || | ||     ||
GTTAATGATGCTGTTGTTGTAGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAGgtttgttgattgctagctgttttttgttccaatcaatccttgctcttcatcaataatacagtacttacacagttatttacacctttttaaatttgttag

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G40440.1 (Glycine max), 5'ss of exon 4
GTTAATGATGCTGTTCTTGCAGGTGACAATACACTCGTTTCCTGTTCTTCAGATACTACCCTCAAGgtttgtcaatttgaatccatcattgttggttttttaacctatggaaaatctgattatt-------tttattgacttatttc--ccttattgagatacaccag
|||||||||||||||||||  ||||| | |||||| ||||| |||||||||||||| ||||| |||||||||  |||   | |  |  || |     | | ||    |||    ||| | || |        |||   | ||||||   |||| ||   ||     ||
GTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAGgtttgttgattgctagctgtttttttattcctatcaatacttggttcttctaaataataccagtacttacataattatttacaccttctttttatgtgttag

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G43070.1 (Glycine max), 5'ss of exon 4
GTTAATGATGCTGTTCTTGCAGGTGACAATACACTCGTTTCCTGTTCTTCAGATACTACCCTCAAGgtttgtcaatttgaatccatcatt-------gttggttttttaacctatggaa-aatctgattatttttattgacttatttcccttattgagatacaccag
|||||||||||||||||||  ||||| | |||||| ||||| ||||| |||||||| ||||| |||||||||  |||   | |  |  ||        |   |  ||   | | || || |||   | || ||  ||     | |   |||| ||   ||    |||
GTTAATGATGCTGTTCTTGTTGGTGATAGTACACTTGTTTCTTGTTCCTCAGATACAACCCTTAAGgtttgttgattgctagctgttttttattccaatcaatacttgttcttctgaaataataccagtacttacataattatttacaccttctttttatgtgtcag

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G42990.1 (Glycine max), 5'ss of exon 4
GTTAATGATGCTGTTCTTGCAGGTGACAATACACTCGTTTCCTGTTCTTCAGATACTACCCTCAAGgtttgtcaatttgaatccatcatt-gtt--ggtt--ttttaacctatggaaaatctgattatttttattgacttatttcc-cttattgagatacaccag
|||||||||||||||||||  ||||| |  ||||| ||||| |||||||||||||| ||||| |||||||||  |||  || |  |  || |||    |   |  |  |   |    |||   |   |  |||   | |||||| | | | || | ||     ||
GTTAATGATGCTGTTCTTGTTGGTGATAGCACACTTGTTTCTTGTTCTTCAGATACAACCCTTAAGgtttgttgattgcaagctgttttttgttccaatcaatccttgctcttcatcaataacacagtacttacatagttatttacacctttttaaatttgttag

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G30050.1 (Glycine max), 5'ss of exon 3
GTTAATGATGCTGTTCTTGCAGGTGACAATACACTCGTTTCCTGTTCTTCAGATACTACCCTCAAGgtttgtcaatt-tgaatccatcattgttg--gtt---------ttttaacctatggaaa--atctgattatttttattgacttatttc-ccttattgagatacaccag---------------------
|||||||||| ||||||||  ||||| |||   || ||||| |||||||||||||| ||||| |||||| ||  | | |  ||   |  | ||||   ||         | ||  ||  ||  ||   |  |    | |  ||| | || || | ||   ||  | |  ||  |                     
GTTAATGATGTTGTTCTTGTTGGTGATAATGTTCTTGTTTCGTGTTCTTCAGATACAACCCTTAAGgttcgttgactattgattagttgtagttgtaattaatcctcgctcttttcccgtgataacggtacgtcagtatcgattcaatttttccacccccttttgtttaacttggtggttgtatgtttgtgctag