Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAAgtaattcaccaaccatgactgcaacactttttcttcctgttcatggctatggttgttcttgttgcttactagatcttgactgtgtatgcacag

Basic information

species Vitis vinifera
transcript Vv13s0067g03070.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g03070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA06G14750.1 (Glycine max), 5'ss of exon 4
CAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAAgtaat-tcaccaaccatgactgca-acactttttcttcctgttcatggctatggttgttcttgttgcttactagatcttgactgtgtat-gcacag----------
 | || ||  |   ||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| || ||||||  |  | |||  |  ||  | | | |  |   |  | | |  |  | |  |     || |    |  || ||||   ||||  || |  | |          
GAATCGTCGGTAACGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGAATTAACAAgtaaaattcctaacattagctatatatagtgctatattatatactagcttttaatcacatttctaa--tgttaaatctgctctgtcaattgttctgccgaaaacag

upper sequence: Vv13s0067g03070.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA04G40100.1 (Glycine max), 5'ss of exon 4
CAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAAgta--attc-----accaaccatgactgcaacact---------ttttcttcctgttcatggctatggttgttcttgttgcttactagatcttgactgtgtatgcacag-----------
 | || ||  |  |||||||||||||||| ||||| |||||||| || ||||| ||||| || || || |||||  ||||     |  | | ||   |  |   ||         || |||        |    | | | |||  || |   ||  || ||||  |||||   ||  | |           
GAATCGTCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAgtaaaattcttaacattagctatatatatagtgctaccatatatttgtctctagaactagaagtgtagatgtatttttctattgttaaatctgcactgtcattgttctgctgaaaaacag