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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAGgtatgccaactttcccatacatgttttagctttttgtcctttttttcttgttcgttgttatcactgtgccttgctgtttgtttctgacatacag

Basic information

species Vitis vinifera
transcript Vv13s0019g04090.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04090.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G35630.1 (Glycine max), 5'ss of exon 4
GACAAGTGGTCTTCTGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAGgtatgccaactttcccatacatgttttagctttttgtcctttttttcttgttcgttgttatcactgtgcctt-gctgtttgtttctgacatacag
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GACAAGTGGTCTTCAGCTTATGATTGCAGAACTATTCTTCTGTCTATTCAAAGTTTATTGGAAGgtctgtt--ttttttaattttattttta--tatatattttgagttttgcattcacttttgcatgcttgtctgagcagtttactttctaataacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712977|gb|FC062103.1|FC062103
EST:     TGCCTATGATTGCAAAACCGTTCTTTTATC-ATTCAAAGTCTATTGGGAG                         AAACCA-CATAGAGAGTCCTCTCA-CAGCTATGCTGCATCAT-ATGGAACA
genomic: TGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAGgtatgccaac ... tgacatacagAGCCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACA
EST: gi|110426829|gb|EC993253.1|EC993253
EST:     TGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAG                         AGCCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACA
genomic: TGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAGgtatgccaac ... tgacatacagAGCCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACA
EST: gi|161720059|gb|FC065103.1|FC065103
EST:     TGCCTATGATTGCAAA-CCGTTCTTTTATC-ATTCAA-GTCTATTGGGAG                         AACC-AACATAG
genomic: TGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAGgtatgccaac ... tgacatacagAGCCCAACATAG
EST: gi|110711177|gb|EE087407.1|EE087407
EST:     TGCCTATGATTGCAAAACCGTTCTTTTATC-ATTCAAAGTCTATTGGGA-                         AGACCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGGAA
genomic: TGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAGgtatgccaac ... tgacatacagAG-CCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGG-AA
EST: gi|28961969|gb|CB341008.1|CB341008
EST:     TGCCTATGATTGCAAAACCGTTCCTTTATCCATTCAAAGTCTATTGGGAG                         AACCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACA
genomic: TGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAGgtatgccaac ... tgacatacagAGCCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACA
EST: gi|110686046|gb|EE063296.1|EE063296
EST:     TGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAG                         AACCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACA
genomic: TGCCTATGATTGCAAAACCGTTCTTTTATCCATTCAAAGTCTATTGGGAGgtatgccaac ... tgacatacagAGCCCAACATAGAGAGTCCTCTCAACAGCTATGCTGCATCATTATGGAACA