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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTGAGTCCAGCTCATACCTTGCTTCAAATACAATGTCTTGATCAAAAAGGCCTCTTCTATGACATTATGAGGACTTCAAAAGACTGCAATATTCAGgtatttgctgatagagtttctagtaactcaattttagtcgggcatggattaatctggttccactaaagctatagattctttctttcttgaatgtttgaat...

Basic information

species Vitis vinifera
transcript Vv13s0019g00740.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA18G52600.1 (Glycine max), 5'ss of exon 4
TTTTCTGAGTCCAGCTCATACCTTGCTTCAAATACAATGTCTTGATCAAAAAGGCCTCTTCTATGACATTATGAGGACTTCAAAAGACTGCAATATTCAGgtatttgctgatagagtttctagtaactca--attttagtcgggcatggattaatctggttccactaaagctatagattctttctttcttgaatgtttgaat
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CTCACTGAGCCCAGTTCATACCCTGCTTCAGATACAATGCGTTGATCAGAAGGGCTTGTGTTATGACATTATGAGGATTTCTAAAGACTCTGATATTAAGgtattctgtcct-gaattgttatttatgcatgcccatggccttttgcagttcagcttctcccctagtgaaccat-gtttgcatcaaactaaatcaaaggaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376303|gb|EC941357.1|EC941357
EST:     AAGGCCTCTTCTATGACATTATGAGGACTTCAAAAGACTGCAATATTCAG                         ATTGCCTATGGTCGATTCAATCCAAGTGTGAAAGGCTACCGCAATATGGAT
genomic: AAGGCCTCTTCTATGACATTATGAGGACTTCAAAAGACTGCAATATTCAGgtatttgctg ... aattatatagATTGCCTATGGTCGATTCAATCCAAGTGTGAAAGGCTACCGCAATATGGAT