1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTATTGTAATAGCGTACTTGATGAAGTGCAAAGGATGGAGGTTTGCACAGAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAGgtttgcatatgatacaaatcttgatgttagaggaagcattacaatgagtaatcgcttaagttgaactgacgttatataattttttttcttgggctatatt...
species | Vitis vinifera |
transcript | Vv12s0059g01650.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAG CTGTTCACGAGCAGTTGCAGGAGTATGAGCGGAGTATTTTTGGGTCGATGGEST: gi|110384540|gb|EC948984.1|EC948984
genomic: GAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAGgtttgcatat ... tgtatcgtagCTGTTCACGAGCAGTTGCAGGAGTATGAGCGGAGTATTTTTGGGTCGATGG
EST: GAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAG CTGTTCACGAGCAGTTGCAGGAGTATGAGCGGAGTATTTTTGGGTCGATGGEST: gi|110371829|gb|EC935953.1|EC935953
genomic: GAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAGgtttgcatat ... tgtatcgtagCTGTTCACGAGCAGTTGCAGGAGTATGAGCGGAGTATTTTTGGGTCGATGG
EST: GAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAG CTGTTCACGAGCAGTTGCAGGAGTATGAGCGGAGTATTTTTGGGTCGATGG
genomic: GAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAGgtttgcatat ... tgtatcgtagCTGTTCACGAGCAGTTGCAGGAGTATGAGCGGAGTATTTTTGGGTCGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTATTGTAATAGCGTACTTGATGAAGTGCAAAGGATGGAGGTTTGCACAGAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAGgtttgcatatgatacaaatcttgatgttagaggaagcattacaatgagtaatcgcttaagttgaactgacgttatataattttttttcttgggctatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaggaa