Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatgatgcatttaattttttttatagtttctttcgttctgttttcttttgtttggctgatactaccatggagctaaacatggaaccttcccttg...

Basic information

species Vitis vinifera
transcript Vv11s0037g00740.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031227|gb|FQ445252.1|FQ445252
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351014120|gb|FQ434709.1|FQ434709
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAACCAAGCTATTGGAAGGCACAACTCAACAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351012141|gb|FQ426863.1|FQ426863
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351030034|gb|FQ430776.1|FQ430776
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|349826488|gb|FQ418579.1|FQ418579
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|349823897|gb|FQ415308.1|FQ415308
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|349826481|gb|FQ418572.1|FQ418572
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|29785430|gb|CB342413.2|CB342413
EST:     TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351013201|gb|FQ424906.1|FQ424906
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|110687957|gb|EE065957.1|EE065957
EST:     TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAN                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351022559|gb|FQ447081.1|FQ447081
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351013501|gb|FQ425532.1|FQ425532
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|110685326|gb|EE063617.1|EE063617
EST:     TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAACCAAACTATTGTAAGGCACAAATCACCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|349826544|gb|FQ418635.1|FQ418635
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|18459529|gb|BM437807.1|BM437807
EST:     TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351013562|gb|FQ425593.1|FQ425593
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351025963|gb|FQ427975.1|FQ427975
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351016943|gb|FQ424370.1|FQ424370
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351014108|gb|FQ434697.1|FQ434697
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351038161|gb|FQ460853.1|FQ460853
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351042964|gb|FQ434405.1|FQ434405
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|110358895|gb|EC919479.1|EC919479
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|351040083|gb|FQ425169.1|FQ425169
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|110697944|gb|EE075394.1|EE075394
EST:     TCTGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|349823430|gb|FQ423241.1|FQ423241
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
EST: gi|77581072|gb|DV219461.1|DV219461
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCAC
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCAC
EST: gi|351019440|gb|FQ429575.1|FQ429575
EST:     TCCACAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAG                         GGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA
genomic: TCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatg ... cgtgtctcagGGCATTATGTTCCTCAGCTAAGCCAAGCTATTGTAAGGCACAACTCAGCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGTATAAAGGAAGAGACTTCTACATCACAGGAGAGAGTTATGCAGgtttgtgatgatgcatttaattttttttatagtttctttcgttctgttttcttttgtttggctgatactaccatggagctaaacatggaaccttcccttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttccc