Sequence
atgc intronic sequence ATGC exonic sequenceCTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTGgtaaccaaaactagaacacatgcagttaattaattaatcactctctaaccctaattgtttacttaatgatcacaagtttaacccacaaaattttattgcaatttag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g55130.1 (Oryza sativa), 5'ss of exon 4
CTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTGgtaaccaaaactagaacacatgcagttaattaattaatcactctctaaccctaattgtttacttaatgatcacaagtttaacccacaaaattttattgcaatttag
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CTCAAGATGCGTTGCAGTTCTTGATCAGTTGGATGTCCCGCTTCCCACAGTATCGGCACCGGGATTTCTACATTGCTGGAGAAAGCTATGCTGgtaatgt------gtaaactggcgatgtttgcatcaccatctctgaaactattatc-tctgcatcatctgactactgtccatcaacaaaatttgcacaaattctag
upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA02G36600.1 (Glycine max), 5'ss of exon 4
CTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTGgtaaccaaaactagaacacatgcagttaattaattaatcactctctaaccctaattgtttacttaatgatcacaagtttaacccacaaaattttattgcaatttag
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CTCAGGATGCACTGATTTTTGTAATTAGATGGATGTCAAGATTTCCACAATATAAATATAGGGAGTTTTACATTGCTGGAGAGAGCTATGCAGgta-cttgcactagc-------tagtaacaacactagaaacttctaattaatttttgtaaaatttaagctgacgt-tttgagttattattttatgtt----tatag
upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G08090.1 (Glycine max), 5'ss of exon 6
CTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTGgtaaccaaaactagaacacatgcagttaattaattaatcactctctaaccctaattgtttacttaatgatcacaagtttaacccacaaaattttattgcaatttag
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CTCAGGATGCACTGGTTTTTCTAATTAGATGGATGTCAAGATTTCCTCAATATAAATATAGGGAGTTTTACATTGCTGGAGAGAGCTATGCAGgta-cttgcactagtaacaacactaacgactt-ctaattaatttttg----taaaattttagctgacgtttgtgttattattttatg----tttatag--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351027932|gb|FQ425833.1|FQ425833EST: CCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTG GTCATTACGTCCCCCAATTAGCGAAGAAAATCCACGATTACAACAAAGCAT
genomic: CCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTGgtaaccaaaa ... tgcaatttagGTCATTACGTCCCCCAATTAGCGAAGAAAATCCACGATTACAACAAAGCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCAGGATGCTTTAATTTTTTTGGTGAGATGGATGTCAAGATTCCCAAAATACAAACACAGAGAATTCTACATTGCTGGAGAGAGCTATGCTGgtaaccaaaactagaacacatgcagttaattaattaatcactctctaaccctaattgtttacttaatgatcacaagtttaacccacaaaattttattgcaatttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG