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CCTAGTTCTTGATTTGCTTGGGCCTAGTCTTGAAGATCTGTTTGTGTATTGTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatttctctgtagcaagaaacttagtttacataaaagttgtcagaaagtatttcatgtccagtactacaacttggtctcataaatgcgtctgccagaattccacttgattgttgaatagctgattcatgctcccttttttag
species | Vitis vinifera |
transcript | Vv11s0016g03460.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71859743|gb|DT008798.1|DT008798
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71857582|gb|DT006637.1|DT006637
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71859339|gb|DT008394.1|DT008394
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71864348|gb|DT013403.1|DT013403
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71859319|gb|DT008374.1|DT008374
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71864880|gb|DT013935.1|DT013935
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|32250210|gb|CD716029.1|CD716029
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71858976|gb|DT008031.1|DT008031
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71860850|gb|DT009905.1|DT009905
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71863788|gb|DT012843.1|DT012843
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71863133|gb|DT012188.1|DT012188
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|110373710|gb|EC938001.1|EC938001
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71863496|gb|DT012551.1|DT012551
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71873064|gb|DT022119.1|DT022119
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|294965830|gb|GW837313.1|GW837313
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|110702369|gb|EE081005.1|EE081005
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|352781444|gb|FQ468288.1|FQ468288
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|71855998|gb|DT005053.1|DT005053
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTEST: gi|71861658|gb|DT010713.1|DT010713
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGT
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|27580104|gb|CB002799.1|CB002799
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|352768395|gb|FQ469571.1|FQ469571
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCEST: gi|110710321|gb|EE086552.1|EE086552
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
EST: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATG ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
genomic: GTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatt ... ccttttttagATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTAGTTCTTGATTTGCTTGGGCCTAGTCTTGAAGATCTGTTTGTGTATTGTGGGAGGAAGTTCTCCTTGAAGACAGTCTTAATGTTGGCTGATCAAATGgtaaagcatttctctgtagcaagaaacttagtttacataaaagttgtcagaaagtatttcatgtccagtactacaacttggtctcataaatgcgtctgccagaattccacttgattgttgaatagctgattcatgctcccttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT