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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag

Basic information

species Vitis vinifera
transcript Vv09s0002g03570.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 21
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaa-actaac-tcaaacctccattaatgtttaaaatttcag
| |||| || ||| | ||||||||  | || |||||||| || ||||||||||||| | |  |||||||||| ||||||||||||||||| || ||||| || ||||  || |    |    |||  |  |  || |   |||| |||      ||  | || |  ||| |  |     ||| |||  ||||| |        
GGCTGTCTCAATCTCCCCAAACCATGAGGTTGCATCCATCTTCGCAGCAGCTTTCTTTTCTCTCTTCAATCTCTTCTCAGGCTTCTTCATTCCGAGACCGgtcagtt-gttgtttcaatcaccatccctgcgatcct--tttcctacctgtaggattaaatagaggactcatgttttttctctattcctgtttcag-------

upper sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 22
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
|||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||||| | |||| ||||| ||||| || ||||| ||||| ||||| || ||| |  ||     | |  | |    |  || |  |     |||  | || |   | |    ||||||  ||  || |    |  |||    ||||||
GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattct---aatttcgttattatattgaaaca----aacatatcttacataatctttactaacataactcttctaccaactttggcttttcag

upper sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G21540.1 (Glycine max), 5'ss of exon 21
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagttcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
|||||| ||||||||||||||||||||||| ||||| || ||||||||||| ||||||| | |||| ||||| ||||| || ||||| ||||| ||||| || ||| |  || |   |||  | ||     ||| ||     | | |  | || |   | | |  |||||   |  | || |  ||  |||    ||||||
GACTGTGTCCATCACACCAAACCACCAAGTGGCATCAATCTTTGCAGCAGCATTCTATGGACTCTTTAATCTCTTCTCTGGTTTCTTTATCCCAAGACCGgtgagtaccattcc---agtttcgtaa----ttttattgaaacaagcatatcttacataatccttactaaaa-actcttctaccaac-tttggcttttcag

upper sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 21
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagt-tcattttc-ctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
|||||||||||| ||||||||||||||||| ||||| ||  ||| |||||| ||||| | | |||||||||| || || || || || ||||| |||||||||||| ||||| |   |   |   ||       |  | |     ||| |||    |     |    | | ||   |   |  ||| | ||||||   |||  
GACTGTTTCCATTACACCAAACCACCAAGTTGCATCAATCCTTGGAGCAGCATTCTACGGAATCTTCAATCTATTTTCTGGTTTTTTTATCCCAAGACCAgtaagtatcattctagtttgttattatgcatcaatagaagaagaacaaacaaataaagtatttgattatttaccttattttttattca-gtttaatcattc--

upper sequence: Vv09s0002g03570.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 22
GACTGTTTCCATCACACCAAACCACCAAGTAGCATCCATATTTGCAGCAGCTTTCTATGCAGTCTTCAATCTTTTCTCAGGCTTCTTCATCCCCAGACCAgtaagt-tcattttcctcagtggcatagccactttcatgccttccaaccaacctcatccactacaaactaactcaaacctccattaatgtttaaaatttcag
|||||||||||| ||||||||||||||| | ||||| ||  ||| |||||| || ||||   |||||||||| || || || || || ||||| ||||||||||||  |||| |  |  |     ||  ||     ||       |  |    ||||   ||  ||  ||| |    | |  || ||  |||    ||||||
GACTGTTTCCATTACACCAAACCACCAAATTGCATCAATCCTTGGAGCAGCATTTTATGGGATCTTCAATCTCTTTTCTGGTTTTTTTATCCCAAGACCAgtaagtaccattctagtttggttattatgcatcaatataagaattactcg---tcatgttctctaacgtaatt---gcttgtatcaac-tttggcttttcag