Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATGTAACAATGTACCTCAATGATTGCCAGCGTACGGATTTCTATGAAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgcatattcatgccctccagctttttccatgttataagtaatgatccgagtcatgcttatgaaattttgttttgcag

Basic information

species Vitis vinifera
transcript Vv08s0040g00390.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os01g17170.1 (Oryza sativa), 5'ss of exon 4
GTTTATGTAACAATGTACCTCAATGATTGCCAGCGTACGGATTTCTATGAAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgag-------cctgcatattcatgccctccagcttt-ttccatgttataagtaatgat--ccgagtcatgcttatgaaattttgttttgcag-------
|| ||||| || |||||||| ||||||||||| |||||    ||||||||||| ||||| ||  |||| |||||||| |||||||||||||| || ||||| ||        || | | ||| ||    | |  ||  ||   ||   ||  | |   |   | || | || ||  |||   ||| |    |        
GTGTATGTGACCATGTACCTAAATGATTGCCAACGTACTACATTCTATGAAGGGATTGGTCTGGACACCAAAGAATTCGACATGCATGTGATAATTGAGgtaagaaaatcaacttccttttcttgtttacaaaattaattatgtgccctactttactgtagtccagac-tgtttcagaagaattgctgaatattaaaaca

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GRMZM2G081462_T01 (Zea mays), 5'ss of exon 4
GTTTATGTAACAATGTACCTCAATGATTGCCAGCGTACGGATTTCTATGAAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtg-----agcctgcatatt-------catgccctccagctttttccatgttataagtaatgatccgagtcatgc--ttatgaaatttt---gttttgcag--------------------------------------------------------------------------------------------
|| ||||| || |||||||| ||||| ||||| || || |  |||||||| |||||||| ||  |||| |||||||| ||||||||||||||||| |||||         |||||| ||       |||  || || | ||     |  |  |   || |  || ||   |||   |||  |||  ||     ||  ||                                                                                             
GTGTATGTGACCATGTACCTGAATGACTGCCAACGCACTGCATTCTATGAGGGAATTGGTCTGGACACCAAAGAATTCGACATGCATGTGATCATCGAGgtataaatgagctgcattttgtcatttcatttccacctgtttgccatacatagttcatacttttctgaacaatgtcattacaaaaggttaggaattcacatgaaatttcttagagttcgccgtcgacgcttgggagaatctatgatttgcttctagaaatgttggcgtgaattaaatatgcgtacccatgcag

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G30350.1 (Glycine max), 5'ss of exon 4
GTTTATGTAACAATGTACCTCAATGATTGCCAGCGTACGGATTTCTATGAAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgcatattcatgccctccagctttttccatgttataagtaatgatccgagtcatgcttatgaaattttgttt-tgcag----------------
|||||||| |||||||| |||||||||||||| ||||| | |||||||||||| ||||| || |||||||||||||||||||||||||| ||||| ||||| ||  ||  | | |||    || |   |   |  |        | ||| |  |  | ||   |||    || | ||  | ||                 
GTTTATGTTACAATGTATCTCAATGATTGCCAACGTACAGCTTTCTATGAAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATCATCGAGgttagtttgtgtctgcat-ttttctataatcaccattccctccgttgatgttttgtataatcggtatttgtttctattcattcaaaattacttgcgaattt

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G27380.1 (Glycine max), 5'ss of exon 4
GTTTATGTAACAATGTACCTCAATGATTGCCAGCGTACGGATTTCTATGAAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgcatattcatgcc-ctccagc-----tttttccat-gttataagtaatgatccg-agtcatgcttatgaaattttgttt-tgcag-------
|||||||| |||||||| |||||||||||||| ||||| | |||||| ||||| ||||| || |||||||||||||||||||||||||| || || ||||| ||  ||  | | |||    ||  |       ||  ||||| |||||     || |||   | |  |  ||||  | | |   ||    |        
GTTTATGTCACAATGTATCTCAATGATTGCCAACGTACAGCTTTCTACGAAGGCATTGGACTTAACACAAAAGAATTTGACATGCATGTCATTATCGAGgttagtttgtgtttgcatttttctataatcaccattcctccattgttattttgtataatcaatatttgtttttatccattctcaattacataatcaattt

upper sequence: Vv08s0040g00390.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G56940.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTTATGTAACAATGTACCTCAATGATTGCCAGCGTACGGATTTCTATGAAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgcat--attcatgccctccagctttttccatgttataagtaatgatccgagtcatgcttatgaaattttgttttgcag
|||||||| ||||||||||||||||| |||||  | ||  ||||||| || || || ||| | |||||||| || || || |||||||| ||||| ||||| |     | |  |   |     |  |  ||   |  ||||||      |  || ||   ||| |   || ||||  ||  |   
GTTTATGTGACAATGTACCTCAATGACTGCCAAAGAACTAATTTCTACGAGGGTATCGGGTTAAACACAAAGGAGTTCGATATGCATGTCATCATCGAGgtaaaggaacttgaaacaagaagattaatattaacctgtgttatgttcctttttctgaaa-atgtt---gagatttgtttcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71869377|gb|DT018432.1|DT018432
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|351055180|gb|FQ440519.1|FQ440519
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110423629|gb|EC989976.1|EC989976
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110378970|gb|EC944133.1|EC944133
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|71870159|gb|DT019214.1|DT019214
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|77588049|gb|DV223236.1|DV223236
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|26260252|gb|CA811315.1|CA811315
EST:     TTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: TTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|32269653|gb|CD718812.1|CD718812
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|351020285|gb|FQ445892.1|FQ445892
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|351016619|gb|FQ424046.1|FQ424046
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|34362535|gb|CF404120.1|CF404120
EST:     CATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: CATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|26267358|gb|CA818421.1|CA818421
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110414754|gb|EC980606.1|EC980606
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110413967|gb|EC979787.1|EC979787
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|352763555|gb|FQ473258.1|FQ473258
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|33402723|gb|CF208350.1|CF208350
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110690290|gb|EE067270.1|EE067270
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110377336|gb|EC942399.1|EC942399
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|351025889|gb|FQ427901.1|FQ427901
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|349832790|gb|FQ422923.1|FQ422923
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|352765127|gb|FQ465824.1|FQ465824
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|29785929|gb|CB343297.2|CB343297
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110420571|gb|EC986846.1|EC986846
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|34362682|gb|CF404267.1|CF404267
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110386810|gb|EC951438.1|EC951438
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|352778428|gb|FQ465738.1|FQ465738
EST:     AGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGTTCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|28969742|gb|CB348775.1|CB348775
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110427705|gb|EC994155.1|EC994155
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|46919001|gb|CN548330.1|CN548330
EST:     AAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATTTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110382520|gb|EC946819.1|EC946819
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|46909620|gb|CN545165.1|CN545165
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATTGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110728059|gb|EE103306.1|EE103306
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|22011440|gb|BQ796474.1|BQ796474
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|30320355|gb|CD003617.1|CD003617
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110729194|gb|EE105276.1|EE105276
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110429336|gb|EC995827.1|EC995827
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110368306|gb|EC932277.1|EC932277
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110368656|gb|EC932645.1|EC932645
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110380283|gb|EC945535.1|EC945535
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110409407|gb|EC975068.1|EC975068
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110714917|gb|EE092374.1|EE092374
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|45771212|gb|CN007064.1|CN007064
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110395920|gb|EC961594.1|EC961594
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110395617|gb|EC961284.1|EC961284
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110398185|gb|EC964362.1|EC964362
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|26265284|gb|CA816347.1|CA816347
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110690560|gb|EE067764.1|EE067764
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|351026011|gb|FQ428023.1|FQ428023
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110364107|gb|EC927753.1|EC927753
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110393414|gb|EC958633.1|EC958633
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|110717714|gb|EE093810.1|EE093810
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|28964631|gb|CB343664.1|CB343664
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
EST: gi|28963604|gb|CB342637.1|CB342637
EST:     AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAG                         ACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC
genomic: AAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgc ... tgttttgcagACCAACCGCACAACTGCCAGGATCTTCCCTGCTGTGCTGGATGTTGAGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTATGTAACAATGTACCTCAATGATTGCCAGCGTACGGATTTCTATGAAGGAATTGGGCTCAACACAAAAGAATTTGACATGCATGTGATCATAGAGgtgagcctgcatattcatgccctccagctttttccatgttataagtaatgatccgagtcatgcttatgaaattttgttttgcag

- - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA