Sequence
atgc intronic sequence ATGC exonic sequenceGAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttgtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggttatgggtgtacatgcctgctttatgtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G37020.1 (Glycine max), 5'ss of exon 4
GAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttgtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggttatgggtgtacatgcctgctttatgtc---
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AACCTTTACAAACTTATCAGAAGTGTGGTCTAAGGAAGTGGAACTCTACTCAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagttttatg--ctccagtattgggcctgaatatatgaccaaaggcaatgaatttgtaattgtcatgaaatgttcctcattgaaata-gttgaaaattcaa
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA03G34330.1 (Glycine max), 5'ss of exon 4
GAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttgtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggt-tatgggtgtacatgcctgctttatgtc---
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AACCTTTACAAACTTATCAGAAGTGTGGTCTAAGGAAGTGGAACTCTACTCAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagttttatg--ctccagtattgggcctgaatatatgaccaaaggcgatgaatttgtaatt--ttcatgaaatgttcctcattaaaattgttgaaaatagtg
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G06780.1 (Glycine max), 5'ss of exon 4
GAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttgtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggttatgggtgtacatgcctgctttatgtc----
| ||| |||||||| || || |||||| |||||||||| || || || || ||||||||| | || ||||||||||| |||||||||||||||||||||||||||| ||| | | | ||| | || | || || || | | | || | ||| | | | | | | | || || |
CACCTTCACAAACTTATCAGAAGTGTGGTCTAAAGAAGTGGAACTCTATTCAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtgt---ttttagtcttgtgcattaatatgtgacccaaggaaatggatcagtaactactgtgaaatctttcctcaatgaaa-tgtttgaaaataaaa
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA13G20970.1 (Glycine max), 5'ss of exon 4
GAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttgtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggttatgggtgtacatgcctgctttatgtc-----
| ||| |||||||| || |||||| |||||||||| || || || || ||||||||| | || ||||||||||| |||||||||||||||||||||||||||| ||| | | | ||| | || || || || | | |||| | ||| | | | | | | | || || |
CACCTTCACAAACTTATCTTTAGTGTGGTCTAAAGAAGTGGAACTCTATTCAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtgt----tttagtcttgtgcattaatgtatgacccaaggaaatgaatcagtaactactgtgaaatctttcctcaatgaaa-tgtttgaaaataaaat
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G09910.3 (Arabidopsis thaliana), 5'ss of exon 5
GAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagtttt-gtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggttatgggtgtacatgcctgctttatgtc
|| ||| |||||| | ||| | ||||||||||| | ||||| || |||||||| || ||||| | |||||||| ||||| || |||||||||||||| ||| || | | | | ||| | | | | | | | | | || | || |
GACATTTTTGAACTTGGCAGATATTTGGGCTAAAGAGATTGAGCTATATTCGACTAACCATGACTGCATTAAGATGCTCGTTGGCAACAAAGTTGATAGAgtgagtagcagtagtagtaacacttgtagtcaaacaa-----cttgagatcggtttcactgatag--ttgtcattgcag----------------------
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ14579 (Selaginella moellendorffii), 5'ss of exon 4
GAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttgtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggttatgggtgtacatgcctgctttatgtc
| || || || | ||||| ||| ||||| || ||||| ||||||||||| ||||| ||||||||| |||| |||||||| ||||| || || || || | | | || | | | | | | | ||| |
TACATTCACGAATCTTCAAGATGTTTGGCTCAAAGAGGTCGAGCTCTACTCGACTAACCAGGATTGTGTGAAGCTGCTGGTTGGAAACAAAGTCGACAGGgtctgtactattgtttccgatgaatttgtctgactcctttcctttgaactccag----------------------------------------------
upper sequence: Vv08s0007g04740.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: EFJ26280 (Selaginella moellendorffii), 5'ss of exon 4
GAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttgtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggttatgggtgtacatgcctgctttatgtc
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TACGTTCACGAACCTTCAAGATGTTTGGCTCAAAGAGGTCGAGCTCTACTCGACTAACCAAGATTGTGTGAAGCTGCTGGTTGGAAACAAAGTCGACAGGgtctgtcttattgtttccgatgaatttgtctaactcctttcctttgaactccag----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110391637|gb|EC956625.1|EC956625EST: CGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGA GAATCTGAAAGGGTTGTAAGCAGAGAAGAGGGTATTGCTCTTGCAAAAGAG
genomic: CGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttg ... atgatttcagGAATCTGAAAGGGTTGTAAGCAGAGAAGAGGGTATTGCTCTTGCAAAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGCTTTACAAACTTGTCCGATGTGTGGGCTAAAGAAGTAGAGCTTTACTCGACTAATCAGGACTGTGTGAAGATGCTTGTTGGAAATAAAGTTGATAGAgtaagttttgtgatctctgcttccatgcttaaaaactggatcccagaagaagaattattaaatggtttatggttatgggtgtacatgcctgctttatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaag