1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACATGTAAGGACTATGAAAATGAATGATGATGTTCAAGTGGTTGCTGTTAGTCCCGATGCTAAGTATATCGCAGCTGCATTGTTGGATTGTACAGTGAAGgtgagatgacttctttaaccttctccagttctctctttttgccatccaaattcttgaaaaggtataaaatgtggtttttttttatgctaattaatatttt...
species | Vitis vinifera |
transcript | Vv08s0007g04690.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCCCGATGCTAAGTATATCGCAGCTGCATTGTTGGATTGTACAGTGAAG GTTTTCTTTATGGATTCCCTCAAATTTTTCCTGTCCTTATATGGTCACAAGEST: gi|351013542|gb|FQ425573.1|FQ425573
genomic: GTCCCGATGCTAAGTATATCGCAGCTGCATTGTTGGATTGTACAGTGAAGgtgagatgac ... cattttccagGTTTTCTTTATGGATTCCCTCAAATTTTTCCTGTCCTTATATGGTCACAAG
EST: GTCCCGATGCTAAGTATATCGCAGCTGCATTGTTGGATTGTACAGTGAAG GTTTTCTTTATGGATTCCCTCAAATTTTTCCTGTCCTTATATGGTCACAAGEST: gi|351016863|gb|FQ424290.1|FQ424290
genomic: GTCCCGATGCTAAGTATATCGCAGCTGCATTGTTGGATTGTACAGTGAAGgtgagatgac ... cattttccagGTTTTCTTTATGGATTCCCTCAAATTTTTCCTGTCCTTATATGGTCACAAG
EST: GTCCCGATGCTAAGTATATCGCAGCTGCATTGTTGGATTGTACAGTGAAG GTTTTCTTTATGGATTCCCTCAAATTTTTCCTGTCCTTATATGGTCACAAG
genomic: GTCCCGATGCTAAGTATATCGCAGCTGCATTGTTGGATTGTACAGTGAAGgtgagatgac ... cattttccagGTTTTCTTTATGGATTCCCTCAAATTTTTCCTGTCCTTATATGGTCACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGTAAGGACTATGAAAATGAATGATGATGTTCAAGTGGTTGCTGTTAGTCCCGATGCTAAGTATATCGCAGCTGCATTGTTGGATTGTACAGTGAAGgtgagatgacttctttaaccttctccagttctctctttttgccatccaaattcttgaaaaggtataaaatgtggtttttttttatgctaattaatatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tataaaa