1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTTCAAATAAAAGAGTCTGTGAGGTATGGAAGGATAATCTCTTTTGGAAAAGCAACATCACAGTTACCTTCTTCCCAGCTCCCCAATCTTGGTTCCAAGgtactattttctcttcttcatttccattgttcttggtgcaaaaggactaaacttatcgtatgatgtgtatactagtaaaactctccaactaatgactaaa...
species | Vitis vinifera |
transcript | Vv06s0061g01110.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGCAACATCACAGTTACCTTCTTCCCAGCTCCCCAATCTTGGTTCCAAG GATTTTTTGCGCACAAGTAATCCCACGAAATTCAACTCATTATGCAGCGAGEST: gi|71861915|gb|DT010970.1|DT010970
genomic: AAGCAACATCACAGTTACCTTCTTCCCAGCTCCCCAATCTTGGTTCCAAGgtactatttt ... tccttggcagGATTTTTTGCGCACAAGTAATCCCACGAAATTCAACTCATTATGCAGCGAG
EST: AAGCAACATCACAGTTACCTTCTTCCCAGCTCCCCAATCTTGGTTCCAAG GATTTTTTGCGCACAAGTAATCCCACGAAATTCAACTCATTATGCAGCGAG
genomic: AAGCAACATCACAGTTACCTTCTTCCCAGCTCCCCAATCTTGGTTCCAAGgtactatttt ... tccttggcagGATTTTTTGCGCACAAGTAATCCCACGAAATTCAACTCATTATGCAGCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCAAATAAAAGAGTCTGTGAGGTATGGAAGGATAATCTCTTTTGGAAAAGCAACATCACAGTTACCTTCTTCCCAGCTCCCCAATCTTGGTTCCAAGgtactattttctcttcttcatttccattgttcttggtgcaaaaggactaaacttatcgtatgatgtgtatactagtaaaactctccaactaatgactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca