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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATTGAAGTTTTTATATCCTTTGGATATTAGTATCAAGGAGAAAATAGAGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactcttttagtaaagttctggcattttactttctaattacttgatgaattgttataaattttgaagtcctattagacttcaattttgactctgatt...

Basic information

species Vitis vinifera
transcript Vv06s0004g01160.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os09g27420.2 (Oryza sativa), 5'ss of exon 4
GCCATTGAAGTTTTTATATCCTTTGGATATTAGTATCAAGGAGAAAATAGAGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactcttttagtaaagttctggcattttactttctaattacttgatgaattgttataaattttgaagtcctattagacttcaattttgactctgatt------------
 ||  |||| ||||| |||||||| ||   | | || |||||||| || ||| ||||||| ||||  || ||||| ||||| ||||||||||| |||||||||  ||            | ||   |  |    |||| ||||||   |      || ||  |  |    | ||   |  | |    ||| || ||||              
CCCTCTGAAATTTTTGTATCCTTTAGAATCTGGCATAAAGGAGAAGATTGAGTCAATAGCTAAGTTCTATGGTGCTAGCGGCGTTGAATACTCTGAACAGgtatcct------------tgctactacctcctattctgattactgtgtttgagattgtatctactatctttctcccatgcctttcatttcacactgaaagaggaatcccct

upper sequence: Vv06s0004g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA10G44010.1 (Glycine max), 5'ss of exon 4
GCCATTGAAGTTTTTATATCCTTTGGATATTAGTATCAAGGAGAAAATAGAGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctttta--gtaaagttctggcattttactttctaattacttgatgaattgttataaattttgaagtcctattagacttcaattttgactctgatt
||||||||||||  | |||||| | ||  | ||||| || |||||||||||||||||||| ||||| || || ||||| |||||||| ||||||||||||||   ||||| |   |||  ||| ||  | ||||||||   | |  |  | |       ||        | |||  || | |   | |  |  |||      
GCCATTGAAGTTCCTGTATCCTGTTGAACTGAGTATAAAAGAGAAAATAGAGGCAATAGCAAAGTCATATGGAGCCAGGGGTGTTGAGTACTCAGAACAGgtgatctcttctcttgtatggttatgaaagtttactttt--actgttaaaggtgcgagcattgcaaccaacgtcacatcaaaggactacataaactacacac

upper sequence: Vv06s0004g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA20G38740.1 (Glycine max), 5'ss of exon 4
GCCATTGAAGTTTTTATATCCTTTGGATATTAGTATCAAGGAGAAAATAGAGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactc--ttttagtaaagttctggcattttacttt-----ctaattacttgatgaattgttataaattttgaagtcctattagacttcaattttgactctgatt
||||||||||||  | |||||| | ||  | ||||| || |||||||||||||||||||| ||||| || || ||||| |||||||| ||||||||||||||   |||   | | |||  ||| ||  | ||||||||      |||  |   || | ||||  |  ||  |   |   | |   |||| ||      || |     
GCCATTGAAGTTCCTGTATCCTGTTGACCTGAGTATAAAAGAGAAAATAGAGGCAATAGCAAAGTCATATGGAGCCAGTGGTGTTGAGTACTCAGAACAGgtgatctcatctcttgtatggttatgaaagtttacttttactgttaaagatgcga-gcattgcaaccaacctcacacatcaaa-ggactacataaactacac-----

upper sequence: Vv06s0004g01160.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G50480.1 (Arabidopsis thaliana), 5'ss of exon 4
GCCATTGAAGTTTTTATATCCTTTGGATATTAGTATCAAGGAGAAAATAGAGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagac--tcttttagtaaagttctggcattttactttctaattacttgatgaattgttataaattttgaagtcctattagacttcaattttgactctgatt
|||  | | |||| | || || ||||| ||| ||||||| || ||||| ||||||||||| ||||| || || ||||| ||||||||||| ||||| |||||      |   |      | ||||   ||||   |   |  ||     | |||    | |  || |       ||||||  ||   || |  |   |    
GCCCCTCAGGTTTCTCTACCCATTGGACATTGGTATCAAAGACAAAATTGAGGCAATAGCTAAGTCATATGGAGCCAGTGGTGTTGAATATTCAGACCAGgtgattgattcctagaccgacttcttcaatttctttgcattgttgtcaaaagaaac-ctgtttatgtaacttatctattatcctgtgatatgtaaaatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352774079|gb|FQ474602.1|FQ474602
EST:     AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|110395134|gb|EC960711.1|EC960711
EST:     AGGCAATAGCCAAGTCGTATGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|352776568|gb|FQ474870.1|FQ474870
EST:     AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|352764252|gb|FQ471232.1|FQ471232
EST:     AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|110390579|gb|EC955498.1|EC955498
EST:     AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|30298388|gb|CB975182.1|CB975182
EST:     AGGCAATAGCCAAGTCGGATGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|110701034|gb|EE078209.1|EE078209
EST:     AGGCAATAGCCAAGTCGTATGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|110725828|gb|EE102739.1|EE102739
EST:     AGGCAATAGCCAAGTCGTATGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|352773997|gb|FQ473129.1|FQ473129
EST:     CGGTGCCAGCGGTGTTGAATCCTCTGAACAG                         GCTGAGAAACAGATTGAGATGTACGGTAGACAAGGGTTTTCTAATCTGCCC
genomic: CGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|352768982|gb|FQ468173.1|FQ468173
EST:     GGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: GGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|110687523|gb|EE065027.1|EE065027
EST:     AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|110425091|gb|EC991468.1|EC991468
EST:     AGGCAATAGCCAAGTCGTATGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|22012114|gb|BQ797148.1|BQ797148
EST:     AGGCAATAGCCAAGTCGTATGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|352776754|gb|FQ472641.1|FQ472641
EST:     AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
EST: gi|110379958|gb|EC945186.1|EC945186
EST:     AGGCAATAGCCAAGTCGTATGGTGCCAGCGGTGTTGAATACTCAGAACAG                         GCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC
genomic: AGGCAATAGCCAAGTCGTACGGTGCCAGCGGTGTTGAATACTCAGAACAGgtagactctt ... gtgtgaatagGCTGAGAAACAGATTGAGATGTACAGTAGACAAGGGTTTTCTAATCTGCCC