Sequence
atgc intronic sequence ATGC exonic sequenceCAAGAGCTGCCCTAAGAACTTCATTTCTTGCTTCATGTGTTTCTGCTTGCCAGAGTAGAACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAGgtgaaacttactcttcttgcttttaaatgtctcattaacagtcttatcctccaattatatggaaaaacagtgcaatgtttggatttaggaatttactaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA07G40370.1 (Glycine max), 5'ss of exon 2
CAAGAGCTGCCCTAAGAACTTCATTTCTTGCTTCATGTGTTTCTGCTTGCCAGAGTAGAACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAGgtgaaacttactcttcttgcttttaaatgtctcattaacagtcttatcctccaattatatggaaaaa----cagtgcaatgtttggattt-aggaatttactaat
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CAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCTTGCCAGAGTAGAACAATGAGTCTTGCTGATACAGTTACTGTAATGGCCCAAAGgtacaacttgcccacatt--tgttgtatttctttttattattttttgtgtaaagggaaagagtacagtcaccaatgaagcagatgatctggaagagtttttt---
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA17G00260.1 (Glycine max), 5'ss of exon 1
CAAGAGCTGCCCTAAGAACTTCATTTCTTGCTTCATGTGTTTCTGCTTGCCAGAGTAGAACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAGgtgaaacttactcttcttgcttttaaatgtctcattaacagtcttatcctcc---aattatatggaaaaacagtgcaatgtttggattt-aggaatttactaat
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CAAGAGCTGCTCTAAGGACTTCATTCCTTGCTTCATGTGTCTCTGCCTGCCAGAGTAGAACAATGAGTCTTGCGGATACAGTTACTGTAATGGCCCAAAGgtacgacttgcccacat--ctgtcgtatttctttttattatttttgtgtaaagggaaagagctctgtcaccaatgaagtagttgatctggaagagttttttt--
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT3G59910.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAGAGCTGCCCTAAGAACTTCATTTCTTGCTTCATGTGTTTCTGCTTGCCAGAGTAGAACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAGgtgaaacttactcttcttgcttttaaatgtctcattaacagtcttatcctccaattatatggaaaaacagtgcaatgtttggatttaggaatttactaat----------
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CTAGAGCTACTCTTAGGACTTCGTTTCTCGCTTCTTGTGTCTCTGCTTGCCAGAGCCGGACAATGAGTCTTTCTGATACAGTAACTGTTATGGCTCAAAGgtaa-------tcatgcaatcttttaatttctctttaa--gtataattctaaagcagatttggggtgct-tagactggttggctgtttctatttttccctgtttcttttt
upper sequence: Vv05s0094g01540.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G44090.1 (Arabidopsis thaliana), 5'ss of exon 1
CAAGAGCTGCCCTAAGAACTTCATTTCTTGCTTCATGTGTTTCTGCTTGCCAGAGTAGAACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAGgtgaaacttactcttcttgcttttaaatgtctcattaacagtcttatcctccaattatatggaaaaacagtgcaatgtttggatt--taggaatttactaat
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CTAGAGCTACACTTAGGACTTCCTTTCTTGCTTCTTGTGTTTCATCTTGCCATAGCCGGACTGTGAGTCTTGCTGATACTGTAACTGTTATGGCTCAAAGgt-acacatttgatactttctcttataagatgtttcccctttttctcagtataattatggtaaaacacttttggattattggagaagttggtttctgttat-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110719143|gb|EE096784.1|EE096784EST: ACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAG GTTGCATGAGCGTCTTCAGGAATGCAATGGGGATAAAGTCTTGAAGGCAGA
genomic: ACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAGgtgaaactta ... tgcttatcagGTTGCATGAGCGTCTTCAGGAATGCAATGGGGATGAAGTCTTGAAGGCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAGAGCTGCCCTAAGAACTTCATTTCTTGCTTCATGTGTTTCTGCTTGCCAGAGTAGAACAATGAGCCTTGCAGATACAGTAACTGTAATGGCCCAAAGgtgaaacttactcttcttgcttttaaatgtctcattaacagtcttatcctccaattatatggaaaaacagtgcaatgtttggatttaggaatttactaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca