1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTAGCTCCCTGTGAGGCTCAGATGGAAAATTGGAAGACAAACTTGGCAATAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAGgtactaccactttgatttcggtagtttattgttgtgccactgaatttctcattgtcttctttcctggttgacatagcttgtttatttaggttttggaatt...
species | Vitis vinifera |
transcript | Vv05s0049g01470.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAG GCATTACTTAATCGTGTGGGCTACACCCCAGAAATCACCCATGGGGTGTTGEST: gi|351044677|gb|FQ443208.1|FQ443208
genomic: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAGgtactaccac ... ctgtgagcagGCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTG
EST: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAG GCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTGEST: gi|351044047|gb|FQ452720.1|FQ452720
genomic: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAGgtactaccac ... ctgtgagcagGCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTG
EST: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAG GCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTGEST: gi|110687005|gb|EE064039.1|EE064039
genomic: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAGgtactaccac ... ctgtgagcagGCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTG
EST: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAG GCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTGEST: gi|351032507|gb|FQ458872.1|FQ458872
genomic: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAGgtactaccac ... ctgtgagcagGCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTG
EST: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAG GCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTG
genomic: TAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAGgtactaccac ... ctgtgagcagGCATTACTTAATCGTGTGGGCTACACCCCAGAGATCAGCCATGGGGTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGCTCCCTGTGAGGCTCAGATGGAAAATTGGAAGACAAACTTGGCAATAATGGTATCAAAAGAGCGACAATACCTGCAGCAATATAGTAACTATAAGgtactaccactttgatttcggtagtttattgttgtgccactgaatttctcattgtcttctttcctggttgacatagcttgtttatttaggttttggaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG