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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAGATGGGTTAAATTATGAGGATTTCTTCTCCAAAAGATCAGAGGCTCTCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatttctcaacctttaggaggctattccagcaagtcccctcctccctatcacaatctagtgcctttggcagccttgaagttaaagtgtcttctt...

Basic information

species Vitis vinifera
transcript Vv02s0109g00360.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351032042|gb|FQ460299.1|FQ460299
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|32247861|gb|CD713680.1|CD713680
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351025046|gb|FQ433463.1|FQ433463
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|33405830|gb|CF211457.1|CF211457
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351049167|gb|FQ449889.1|FQ449889
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|33401498|gb|CF207125.1|CF207125
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAGGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|352789810|gb|FQ478625.1|FQ478625
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|71875744|gb|DT024799.1|DT024799
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAG
EST: gi|349822372|gb|FQ412636.1|FQ412636
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351030119|gb|FQ430861.1|FQ430861
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|352798838|gb|FQ478473.1|FQ478473
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351045998|gb|FQ441381.1|FQ441381
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGCGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351027316|gb|FQ444565.1|FQ444565
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGNGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|352798554|gb|FQ480579.1|FQ480579
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|32247300|gb|CD713119.1|CD713119
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|32459230|gb|CD800404.1|CD800404
EST:     AGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: AGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|110418134|gb|EC984253.1|EC984253
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351032119|gb|FQ460376.1|FQ460376
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|34321097|gb|CF373851.1|CF373851
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|352786750|gb|FQ481125.1|FQ481125
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351012367|gb|FQ430052.1|FQ430052
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351052014|gb|FQ455307.1|FQ455307
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|32270337|gb|CD719496.1|CD719496
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|110426088|gb|EC992485.1|EC992485
EST:     AGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: AGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|110694471|gb|EE071604.1|EE071604
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351035432|gb|FQ459699.1|FQ459699
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|33405748|gb|CF211375.1|CF211375
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351038581|gb|FQ464447.1|FQ464447
EST:     TCGTGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|351015670|gb|FQ427155.1|FQ427155
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
EST: gi|32268282|gb|CD717441.1|CD717441
EST:     TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAG                         GATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG
genomic: TCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatt ... cattctttagGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCAGATGGGTTAAATTATGAGGATTTCTTCTCCAAAAGATCAGAGGCTCTCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGgtatattatttctcaacctttaggaggctattccagcaagtcccctcctccctatcacaatctagtgcctttggcagccttgaagttaaagtgtcttctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc