Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgattcatactattgtttcttcacggagttgatcatatgaaccaattcgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctag

Basic information

species Vitis vinifera
transcript Vv02s0033g01120.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G35220.5 (Glycine max), 5'ss of exon 4
GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgatt-catactattgtttcttcacggagttgatcatatg-aaccaatt-cgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctag
||||||||  ||||||||||  ||||||||||||||||||||| |||| |||| ||||  ||||||||||||  ||||||||||||| ||||| |||||||||||   |  ||  ||  |||| |||||| | |   || ||   ||  | | |||   |  ||   |  | |  | ||       | ||   || | |  |                                                                        
GTTCCCCAACGGTGTTGGTGAATATGTTGATTTGATGCAAGATCTGATCCCAGGAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagttttacttatatcttatt-tttcttgaggtgttttatttcatttagctaatgatggcaatgcaacattgcaattctcaac-actccttaaacatcaa------------------------------------------------------------------------

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G34640.1 (Glycine max), 5'ss of exon 3
GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgattcatactattgtttcttcacggagttga---tcatatgaaccaattcgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctag
|||||||   || || ||||  ||||||||||||||||||||| |||| |||||||||  ||||||||||||  ||||||||||||| ||||| |||||||||||   |  ||    ||  | |||||| | |   ||     |||| |  |  |   | ||     |||    |  |   |    | ||   || | |                                                                           
GTTCCCCGACGGCGTCGGTGAATATGTTGATTTGATGCAAGATCTGATCCCAGAAATGAAAGATGGGACTGTGAGAACTGCCATTGATACTGGTTGTGGGgtgagttttacttgtgtcttatttttcttgaggtgtttttatttcatttagattatggcaatgcaaaattgcaattctcagtcaacactccttaaacatc--------------------------------------------------------------------------

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G08120.1 (Glycine max), 5'ss of exon 4
GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgattcatactattgtttcttcacggagttgatcatatgaaccaattcgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctag
||||||||  |||||||||   ||||||||||| ||||||||| |||| || ||||||  |||||| ||  |||||||||||||||| ||||| ||||| |||||   || ||  |  | |  ||| |        ||  | ||||           ||  | |   ||        ||    |||||  ||| |    || || || |      ||  | ||                                                
GTTCCCCAATGGTGTTGGTAAATATGTTGATTTAATGCAAGATCTGATCCCTGAAATGAAAGATGGAACCATTCGAACTGCCATTGATACTGGATGTGGAgtgag---tgttttgttttttcctttttcttt----ttatttatattggg------aatggcttgcaaa--------ataaccattctcaaagttcc--ttcattactagtttaattacacat------------------------------------------------

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G17500.1 (Glycine max), 5'ss of exon 4
GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgattcatactattgtttcttcacggagttgatcatatgaaccaattcgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctag
||||||||  |||||||||   |||||| |||| ||| ||||| |||| |||||||||  ||||||| |  |||||||||||||||| ||||| ||||| |||||   |  ||| |  | || ||| ||      | |  | ||||  |  | | |  |  |  ||||   |  |  | |||  | |   ||   |  |||| |                                                                   
GTTCCCCAATGGTGTTGGTAAATATGTTAATTTAATGGAAGATCTGATCCCAGAAATGAAAGATGGGTCCATTCGAACTGCCATTGATACTGGTTGTGGAgtgagttttttttcttctttttctttttt------ggtatttatatagagaattcc--ttgcaaattacaattctcaaagttcctgcataaacaataaatttctagtt---------------------------------------------------------------

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT1G31850.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgattcatactattgtttcttcacggagttgatcatatgaaccaattcgataacctat--taatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctag
||||||  | || ||| ||  |||||||||||||||||||||| ||||||| ||||||  ||| || || ||  | || |||||||| ||||| |||||||| || |    |||| |||| |     ||| |  |   | ||  ||    | |    ||||  |    |  | | |||| |                                                                                            
GTTCCCTCGTGGAGTTAGTCACTATGTTGATTTGATGCAAGATCTGATTCCTGAAATGAAAGACGGAACAGTCAGGACCGCCATTGATACTGGCTGTGGGgttagtctctcttca-actact-caagttctctaatcagttctgatcggtcgaggttataattttccgtggtttctttggtag------------------------------------------------------------------------------------------

upper sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: PP1S43_170V6.4 (Physcomitrella patens), 5'ss of exon 4
GTTCCCCAGAGGTGTTGGTGCCTATGTTGATTTGATGCAAGATTTGATTCCAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctgattcatactattgtttcttcacggagttgatcatatgaaccaattcgataacctattaatctatttgatgtttattctggaagctttgatttatgaccatcacctttgtatatgttcccaaaaattgtgtcacttagtctgtgtaattgctttatttctag
||| || |  ||||| ||||  ||| | |||   ||| | ||  | || |||| ||||   |||||  |||||||||||||| | |||||||| |||||||||||  || |  |  |  |      |||   | ||   ||||||  |||   |  | | ||     |    | |    |||| |||||     |   | ||| |   || || |   |                                                    
GTTTCCTAATGGTGTGGGTGAATATATCGATCACATGGAGGAACTCATGCCAGGAATGAAGGATGGCTCTGTTCGAACTGCCTTGGACACTGGTTGTGGGgtgagttctcacgcgcataaa-----cttggtgtag--aatcata--aact--tctggtgac-----agggcactcccggtttgttctg-----tgcaagttaagggaattacgtcaattc--------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110705273|gb|EE081966.1|EE081966
EST:     AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGGTGTGGG                         GTTGCNAGCTGGGGAAGTGATTTNAT-AGATCGTGGCATACTAACAATGT
genomic: AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGG-TGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTT-ATTAGATCGTGGCATACTAACAATGT
EST: gi|30299339|gb|CB976133.1|CB976133
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: gi|110712840|gb|EE088240.1|EE088240
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: gi|110712136|gb|EE089409.1|EE089409
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: gi|219555224|gb|FG984925.1|FG984925
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGTGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: gi|110720926|gb|EE097340.1|EE097340
EST:     CA-AAATGCTANATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGCGAACTGGGGAAGTGATTTA
genomic: -AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTA
EST: gi|110724515|gb|EE100409.1|EE100409
EST:     CA-AAATGCTANATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGCGAACTGGGGAAGTGATTTA
genomic: -AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTA
EST: gi|219555419|gb|FG985032.1|FG985032
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGTGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: gi|110724258|gb|EE099928.1|EE099928
EST:     AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGGTGTGGG                         GGTGCGAGCTGGGG
genomic: AGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGG-TGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGG
EST: gi|219555469|gb|FG984556.1|FG984556
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: gi|219555415|gb|FG985028.1|FG985028
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATGTCT
EST: gi|110685058|gb|EE063045.1|EE063045
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGC                         GTTGCCAGCCTGGGAAG-TGATTTATTAGATCGTGGCATAATAACA-TGGT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGC-TGGGGAGGTGATTTATTAGATCGTGGCATACTAACAATG-T
EST: gi|110723381|gb|EE100627.1|EE100627
EST:     CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGG                         GTTGCAAGCTGGGGAAGTGATTTATT
genomic: CAGAAATGCTAGATGGGACTGTTCGAACTGCCATTGACACTGGGTGTGGGgtgagccctg ... ttatttctagGTTGCGAGCTGGGGAGGTGATTTATT