Sequence
atgc intronic sequence ATGC exonic sequenceGCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgttcttatatgtttttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagtaatgggattgtattggactgctcaaaccga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: LOC_Os02g03580.1 (Oryza sativa), 5'ss of exon 4
GCATATTCTCCCATACCTCCACATGGGTTCTTG------------GCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgta---tttgttcttatatgtttttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagtaatgggattgtattggactg-ctcaaaccga
|| || || | || || || ||||||||||| || |||||||||| ||||| || ||||||||||||| ||||||| ||||| | | ||| | | | || | || ||| | || | | | | ||| | ||| || || || | |
GCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGgtaccctttgtatcttaaaactttattggttccttttatctgatatctgttgaaattac--gggaaaagtggcagtagga--gctttgtgctatctggaatcta
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA09G34170.1 (Glycine max), 5'ss of exon 4
GCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgttcttatatgtttttctcatcggaaattgaaaatgcttatttggatttct-tggaggagaaagtaatgggattg--tattggactgctcaaaccga-
||||||||||| |||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||| |||| | | || | | || |||| | | | | | | || | || | || | || |||| || | | || | | |
GCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAGTCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGgtaattgtcacg----ggtattataaatggcaattccatgtacatggtagtgttaatgtgtaaattaaccttttgctattgcttagtcaaatgtaagatctaac
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA16G15810.1 (Glycine max), 5'ss of exon 4
GCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgttcttatatgtttttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagta-atgggattgtattggactgctcaaaccga--
| |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || |||||||| || ||||||||||| | ||| | | | | | || | || | || | || || || | | || | | | | | || || | ||
ACGTATTCTCCTATACCTCCACATGGGTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGCGTCCAGgtatttgt-cacatacataatgatta--gtcaactcaatctcattggtactataatttagaaattagaatatgtatcctctgagttgtcttagaaatctgatg
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA01G01740.2 (Glycine max), 5'ss of exon 3
GCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgtt-cttatatgtttttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagtaatgggattg--tattggactgctcaaaccga--
||||||||||| |||||||||||||| |||||||| |||| |||||| ||||||||||| |||||||| || |||||| |||| |||| || | | | || ||| | ||| | | | || | || || | || |||| | | | || | | |
GCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGgtaattgtcacttacat-----tataaaaggcaatcccatgtgcatggtagtgttaatgtgaaattaaccttgtgctattgctcagttaaatgtaagacctaact
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA08G34280.1 (Glycine max), 5'ss of exon 4
GCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgttcttatatgtttttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagtaatgggattgta-ttggactgctcaaaccga--
|||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| || |||||||| || ||||||| | | | || || | | | || | | | | |||| || ||| | | | || || || | || | |
ACATATTCTCCTATACCTCCACACGGGTTCTTGGCATCAAGTCCCCAAGCCCACCCATATATGTGGGGCGTCCAGgtatct-tacatacataatgattt-gtcaaacttcttatgttgttatc-attttcgttgcttctgctattgtcaatatgttaactgttatactttagctattg
upper sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: AT2G35530.1 (Arabidopsis thaliana), 5'ss of exon 4
GCATATTCTCCCATACCTCCAC---ATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgttcttatatgtt----tttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagta-----atgggattgtattggactgctcaaaccga--------------------------------------------------
||||||||||| || || || | |||| | |||| || ||||||||| |||||||||| ||||||||||||||||| |||| || || | | | | || || | || || | || | | | | || | || || | | | | | | |
GCATATTCTCCTATGCCGCCGCCTCATGGTTATGTGGCATCTAGTCCCCAACCTCACCCTTATATGTGGGGAGTTCAGgtgaactggcttacgctttatcgctttttactgtga--tgtctatcggtgttcagagtgctggaaaattgcaacattcttattgacttataacgaattcgttcagctgtctttcatcatatctttgattgattactgaatgagacattaaattttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699224|gb|EE076034.1|EE076034EST: GGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAG CATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTAT
genomic: GGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgttc ... ttgcttgcagCATCTAATGCCTCCATATGGTACCCCACCACATCCATATGTTGCAATGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgttcttatatgtttttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagtaatgggattgtattggactgctcaaaccga
- - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggagaa