1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGACAATTATTGGGTTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAGgtctctgctgccttcttttaatattttgttttctatcatacaaacatatgtttaagtttaactaattcgctttgcatatgcag
species | Vitis vinifera |
transcript | Vv01s0026g01960.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAG AAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATTEST: gi|110698594|gb|EE076268.1|EE076268
genomic: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAGgtctctgctg ... gcatatgcagAAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATT
EST: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAG AAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATTEST: gi|352776811|gb|FQ472698.1|FQ472698
genomic: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAGgtctctgctg ... gcatatgcagAAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATT
EST: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAG AAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATTEST: gi|110723267|gb|EE100385.1|EE100385
genomic: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAGgtctctgctg ... gcatatgcagAAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATT
EST: TTTTCTGCAGACATTGGATATTTACTAGGAGATACCAATATGGATTGCAA AAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATTEST: gi|352764959|gb|FQ473607.1|FQ473607
genomic: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAGgtctctgctg ... gcatatgcagAAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCCTTGGATT
EST: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAG AAAATTTAAAGGTACTCCAACATGGGGAGCTATTATTTTTGTCC
genomic: TTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAGgtctctgctg ... gcatatgcagAAAATTTAAAGGTACTCGAACATGGGCAGCTATTATTTTTGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACAATTATTGGGTTTTCTGCAGACATTGGATATTTATTAGGAGATACCAATATGGATTGCAGgtctctgctgccttcttttaatattttgttttctatcatacaaacatatgtttaagtttaactaattcgctttgcatatgcag
- - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAT