1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTTTTCCGGTTGTCATCGGTACGAAGCACACCAGCGCCTAGGGCTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAGgtttgttatcttctgcatcaatgccctaatgccaattttttctatgtattatcatctgttttctcatgttccgtgttttcatgttgcag
species | Vitis vinifera |
transcript | Vv01s0011g01620.t01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAG GCACCACCTCCGCTGAGTGGTAGAAGG-CTGTTGCTTTGAGAGTTGGGGCTEST: gi|110426960|gb|EC993389.1|EC993389
genomic: CTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAGgtttgttatc ... catgttgcagGCATCACCTCCGCTGAGTGGTAGAAGGTC-GTTGCTTTGAGAGTTGGGGCT
EST: CTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAG GCATCACCTCCGCTGAGTGGTAGAAGGTTGTTGCTTTGAGAGTTGGGGCTCEST: gi|32458122|gb|CD799296.1|CD799296
genomic: CTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAGgtttgttatc ... catgttgcagGCATCACCTCCGCTGAGTGGTAGAAGGTCGTTGCTTTGAGAGTTGGGGCTC
EST: CTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAG GCATCACCTCCGCTGACTGGTAGAAGGTTGTTGCTTTGAGAGTTGGGGCTC
genomic: CTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAGgtttgttatc ... catgttgcagGCATCACCTCCGCTGAGTGGTAGAAGGTCGTTGCTTTGAGAGTTGGGGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTTCCGGTTGTCATCGGTACGAAGCACACCAGCGCCTAGGGCTCCCAACAATTCGTTGCAAAGTTCGACGAGGAACGAAAGAAACATTGAGgtttgttatcttctgcatcaatgccctaatgccaattttttctatgtattatcatctgttttctcatgttccgtgttttcatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA