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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCAGCTGTTACTGCTTTAGAAAAAATTGCTGAGGGCTTGTCAATAAGTTCGTATTCAGAAAAGTTACTTGAAATGAAAGCAGAGGCTCTCTTTATGgtctgtatgatttcaatgtattacttcactcagtttttttccctgtctctctattagttattgactcattttaaagtattgaaagtcaagttgccattcatgtaacatgctagaattttggtcttaatgtcggctatttcttggcggcatctcacag

Basic information

species Vitis vinifera
transcript Vv00s0252g00060.t01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0252g00060.t01 (Vitis vinifera), 5'ss of exon 4
lower sequence: GLYMA19G31640.1 (Glycine max), 5'ss of exon 11
TGATGCAGCTGTTACTGCTTTAGAAAAAATTGCTGAGGGCTTGTCAATAAGTTCGTATTCAGAAAAGTTACTTGAAATGAAAGCAGAGGCTCTCTTTATGgtctgtatgatttcaatgtattacttcactcagtttttttc-cctgtctctctattagttattgactcattttaaagtattgaaagtcaagttgccattcatgtaacatgctagaattttggtcttaatgtcggctatttcttggcggcatctcacag
||||||||||| |||||||||||||  | || || |||  |||||||||||||  || |||||||| || ||| ||||||||||||||||||| | | |||| | |   ||| ||||   || || ||||||  ||| | |   | | |   | || ||| |||  |  ||||     |||  || |    ||       ||  ||  ||||    || |  |  |||||||    |                     
TGATGCAGCTGCTACTGCTTTAGAACTAGTTTCTAAGGCATTGTCAATAAGTTTATACTCAGAAAAATTGCTTCAAATGAAAGCAGAGGCTCTATGTTTGgtattttctattccaattatttgctccactcatctttatgcatttttattcttttttgttgttg--ttgttttgcttaatt--aatttggattagggagaataaaaggtgcttt--ttattattgtaatgtcttgcag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689579|gb|EC941386.1|EC941386
EST:     GTTCGTATTCAGAAAAGTTACTTGAAATGAAAGCAGAGGCTCTCTTTATG                         TTGCGGAGGTATGAAGAGGTGATTCAGCTATGTGAGCAGACTCTTGGTTTT
genomic: GTTCGTATTCAGAAAAGTTACTTGAAATGAAAGCAGAGGCTCTCTTTATGgtctgtatga ... catctcacagTTGCGGAAGTATGAAGAGGTGATTCAGCTATGTGAGCAGACTCTTGGTTTT