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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTATGCTGCAAGCATTGTTGTCAGTGAGGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgtaatatttattaatgaggagatagtattaattttgcttccagttacttcaaatatcttttagtttatactcaaattatttatagcaaccattgttttttaaattggtagtttaattacaatgcttgttgatatttcag

Basic information

species Vitis vinifera
transcript Vv00s0181g00120.t01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351013150|gb|FQ424855.1|FQ424855
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|351039899|gb|FQ464937.1|FQ464937
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|351018924|gb|FQ426423.1|FQ426423
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|33404273|gb|CF209900.1|CF209900
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|351047461|gb|FQ454953.1|FQ454953
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|351028547|gb|FQ444828.1|FQ444828
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|351052700|gb|FQ453808.1|FQ453808
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|33404557|gb|CF210184.1|CF210184
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|352798434|gb|FQ480459.1|FQ480459
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|351024039|gb|FQ423462.1|FQ423462
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
EST: gi|349832306|gb|FQ420867.1|FQ420867
EST:     GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAG                         ACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC
genomic: GGGAGAGTCGATACATGACCACTGTTGGTACCCATACATGTCTGCTTCAGgtgctctgta ... gatatttcagACCCAGTTACCTGTGTTTTTGCAAGTACTACTCGGGATCATCCCATTCACC